Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2957 ATGGGTGGAAAGAAAGTGAAACTTGCATTCATAACCAAGGACACAGCAAGGAAAGCAACATATAAAATAAGGGTAAAAGGTTTGATGAAGAAGCTCAATGAAATCACAACTCTATGTGAAATTAAGGCATGTGCTATAGTGTTCAATCCTGAAATTGTTGAACCACAAATTTGGCCATCCATCGAAGGAGTTCAAAGTGTGCTGAACCAATTCATCCATGTTCCAAAATTTGATCGAGGCCGAAAGATGTTGAACCATGAGAGTTACTTGAAGGAAAATATCGAAAAGTTGAGTGAGAAGTTGACGAAAAAAACGAAAGAGAATAGGAAGATGAAGATGACTATTCAAATGTATCACTTTCTTGAGAAAGGGAACATTGAGGGTTTAAGTACCGTTGATCATGATGACCTCACATATGTGATTGATGAGAAAATGGAGGAAATTAATATGAAGATGATGGAAATGGAGATCAATGATCAAAGAGCTCCAAGGTTTGTGAATGGTAGCTAA 510 0.3667 MGGKKVKLAFITKDTARKATYKIRVKGLMKKLNEITTLCEIKACAIVFNPEIVEPQIWPSIEGVQSVLNQFIHVPKFDRGRKMLNHESYLKENIEKLSEKLTKKTKENRKMKMTIQMYHFLEKGNIEGLSTVDHDDLTYVIDEKMEEINMKMMEMEINDQRAPRFVNGS* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2957 169 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Tpr4g2957 169 Gene3D - 14 126 IPR036879 GO:0003677|GO:0046983
Tpr4g2957 169 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Tpr4g2957 169 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Tpr4g2957 169 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr4g2957 169 Coils Coil 94 114 - -
Tpr4g2957 169 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tpr4g2957 169 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 156 - -
Tpr4g2957 169 PANTHER MADS BOX PROTEIN 3 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2957 Tpr-Chr4 33778918 33779427 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2957 1 152 Type I MADS-box Gene Family AT5G48670 44.156 1.02e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr4g2957 SRF-TF 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2957 - - cam:101507243 201.83