Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2941 ATGTTTGGATGTCCAGAGACAGAAAGACTAGATGAAATAGGAAAAATCAATTCAGAGGGAGAAACATCATCTCAAATGGGAAGGAAGCATTTTCATGGCCAAGTTATTGGAACAACCTTAAACACAGTAACTCCTTGTGCTGCATGTAAGCTATTGAGAAGAAGGTGTGCTGAGGAATGCCCTTTCTCTCCTTACTTTTCACCACATGAGCCTCATAAATTTGCAGTTGTTCATAAAGTGTTTGGTGCAAGCAATGTCTCCAAATTGCTATTGGAGGTACCTGAAGGACAAAGAGCAGATGCAGCAAATAGTATGGTTTATGAAGCAAATTTAAGGTTAAGAGATCCTGTTTATGGATGCATGGGTGCAATATCAACATTACAACAACAAGTTCAATCTTTACAAGCAGAACTTCATGCAATTAGAGCTGAAATACTAAAATATAAATATAGAGAAGCAGCTTCTTTTATTTCTTCTCAACAAGTATCAATCCCTACAAATGCAAACTCACAAGGTCTTTCTCAACCTCTTGTTCTTCCTACTTTAGATCCTCCATCTCCTTCTCTTCCTCCACCACAAAAAGTATTAGCTTCTCAATCCATTATCCTTTCGTCGTTGTCTTCGTCTTCGGGTTCCTCTGTCTACACTACATCTAAGAGTACAATGAGTCATGGATCTATTTCTAGTGAAAATATTCCATATTTTATTTAG 711 0.3741 MFGCPETERLDEIGKINSEGETSSQMGRKHFHGQVIGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPHKFAVVHKVFGASNVSKLLLEVPEGQRADAANSMVYEANLRLRDPVYGCMGAISTLQQQVQSLQAELHAIRAEILKYKYREAASFISSQQVSIPTNANSQGLSQPLVLPTLDPPSPSLPPPQKVLASQSIILSSLSSSSGSSVYTTSKSTMSHGSISSENIPYFI* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2941 236 Pfam Lateral organ boundaries (LOB) domain 45 141 IPR004883 -
Tpr4g2941 236 ProSiteProfiles LOB domain profile. 44 145 IPR004883 -
Tpr4g2941 236 PANTHER LOB DOMAIN PROTEIN 30 235 - -
Tpr4g2941 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 30 235 - -
Tpr4g2941 236 Coils Coil 124 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2941 Tpr-Chr4 33538209 33540145 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2941 37 161 AS2 family AT2G30340 80.000 1.81e-72 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr4g2941 LOB 5.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2941 - - ccaj:109795340 313.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2941 4 33538209 33540145 Tpr4g2941 4 33538209 33540145 ECH