Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2940 ATGGCACTTTCTTTTTCTTCTAAAGCTTTACTACAGTTTTGCTTTGTTTTGTTCATGTTTTTGCTTTTAGGAAGTTCTTCAGCTCAACTTTCTGAAAACTTCTATGCTAAGAAATGTCCAAATCTTTTCAATGTTGTCAACTCCGTTGTTCACTCCGCTGTCGCTAAAGAACCTCGCATGGGAGGATCTCTTCTCCGCCTTCATTTTCATGATTGCTTTGTCAATGGTTGTGATGGATCGGTGTTACTTGATGACACCTCCTCCACAAAAGGAGAGAAGACTGCACCCCCCAACAATAATTCATTGAGAGGTTTTGAAGTGATTGATGCCATAAAGTCTAAGGTGGAGTCATTATGCCCTGGTGTGGTCTCATGTGCTGATATTCTAGCCATTGCTGCTCGCGACTCTGTTGCAAATCTTGGAGGACCTCTTTGGAAGGTTAAACTTGGAAGAAGGGATTCAAAGACAGCCAGCTTTAGCGATGCAAGTAGTGGTGTTATTCCACCTCCCTTTTCTACCCTTAGTAACCTTATCAATAGGTTTAAAGCCCAAGGACTCTCTACTAAGGACATGGTGGCCTTATCTGGAGCACACACAATTGGGAAGGCAAGGTGTATTACTTACAAAGATCACATTTACAATGATACAAACATTGATAGTTTATTTGCAAAGTCAAGACAAAGAAACTGTCCAAGAACAAGTGGTACAATAAAAGACAACAATGTAGCTGTTCTAGATTTCAAAACTCCAAACCATTTTGATAACGTGTACTACAAGAATCTCATTAACAAAAAGGGACTTTTCCATTCTGATCAAGTACTTTACAATGGAGGATCTACTGATTCATTGGTTAAAGCTTATAGCAATAATCCAAAAGCCTTTGAATATGATTTTGTTAATGCCATAATTAAGATGGGAAATATTAAGCCTCTTACTGGATCAAAAGGGGAGATTAGGAAGCAATGCAGGAGAGCCAATTAA 981 0.3894 MALSFSSKALLQFCFVLFMFLLLGSSSAQLSENFYAKKCPNLFNVVNSVVHSAVAKEPRMGGSLLRLHFHDCFVNGCDGSVLLDDTSSTKGEKTAPPNNNSLRGFEVIDAIKSKVESLCPGVVSCADILAIAARDSVANLGGPLWKVKLGRRDSKTASFSDASSGVIPPPFSTLSNLINRFKAQGLSTKDMVALSGAHTIGKARCITYKDHIYNDTNIDSLFAKSRQRNCPRTSGTIKDNNVAVLDFKTPNHFDNVYYKNLINKKGLFHSDQVLYNGGSTDSLVKAYSNNPKAFEYDFVNAIIKMGNIKPLTGSKGEIRKQCRRAN* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2940 326 SUPERFAMILY Heme-dependent peroxidases 29 326 IPR010255 GO:0004601|GO:0006979|GO:0020037
Tpr4g2940 326 PRINTS Haem peroxidase superfamily signature 61 75 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tpr4g2940 326 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tpr4g2940 326 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tpr4g2940 326 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tpr4g2940 326 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tpr4g2940 326 Pfam Peroxidase 47 290 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tpr4g2940 326 PANTHER PEROXIDASE 7 325 - -
Tpr4g2940 326 CDD secretory_peroxidase 29 324 IPR033905 GO:0004601|GO:0042744
Tpr4g2940 326 Gene3D Peroxidase, domain 2 168 305 - -
Tpr4g2940 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 190 200 IPR019793 -
Tpr4g2940 326 PRINTS Plant peroxidase signature 39 58 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tpr4g2940 326 PRINTS Plant peroxidase signature 63 83 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tpr4g2940 326 PRINTS Plant peroxidase signature 103 116 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tpr4g2940 326 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tpr4g2940 326 PRINTS Plant peroxidase signature 141 156 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tpr4g2940 326 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tpr4g2940 326 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tpr4g2940 326 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tpr4g2940 326 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tpr4g2940 326 Gene3D - 33 323 - -
Tpr4g2940 326 ProSitePatterns Peroxidases active site signature. 61 72 IPR019794 GO:0004601
Tpr4g2940 326 ProSiteProfiles Plant heme peroxidase family profile. 29 326 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tpr4g2940 326 PANTHER PEROXIDASE 72-RELATED 7 325 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2940 Tpr-Chr4 33520992 33526467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2940 7 326 Peroxidase AT5G58400 63.438 4.76e-149 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2940 K00430 - gmx:100812478 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2940 4 33520992 33526467 Tpr4g2940 4 33520992 33526467 ECH
Tpr4g2940 4 33520992 33526467 Tpr3g3636 3 40413547 40419045 ECH
Tpr6g1822 6 19622297 19626057 Tpr4g2940 4 33520992 33526467 ECH
Tpr4g1051 4 10188002 10190084 Tpr4g2940 4 33520992 33526467 ECH