Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2918 ATGTTGACGGCACCAAAGTTATTGATTGAATTATACCTAGAGGTTGAATCCTCCGACACCATCGACAACGTCAAAGCCAAAATCCAAGATAAGGAAGGAATTCCACCAGACCAACAGCGTCTCATCTTCGCCGGAAAACAACTCGAAGACGGCCGTACTCTTGCCGATTATAACATCCAAAAAGAATCCACACTCCATCTCGTTCTCCGTCTCCGTGGCGGCATGCAAATCTTCGTCAAAACCCTAACTGGCAAAACCATCACACTCGAAGTCGAATCTTCTGACACAATCGACAACGTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAACAACGATTGATCTTTGCAGGAAAGCAATTGGAAGATGGTAGAACTCTTGCTGATTATAATATCCAGAAAGAGTCTACGCTTCATTTGGTTCTTAGGTTACGTGGTGGAATGCAGATTTTTGTGAAGACGTTGACGGGAAAGACGATTACTTTGGAGGTGGAGAGTTCTGATACTATTGATAATGTGAAGGCGAAGATTCAGGATAAGGAGGGGATTCCACCTGATCAGCAGCGATTGATCTTTGCTGGTAAACAGCTTGAAGATGGAAGGACTCTTGCTGATTATAATATTCAGAAAGAATCTACGCTTCACCTTGTTCTCAGGCTCCGTGGTGGCGGCAATGTATAA 690 0.4362 MLTAPKLLIELYLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGNV* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2918 229 CDD Ubl_ubiquitin 75 150 - -
Tpr4g2918 229 SUPERFAMILY Ubiquitin-like 150 227 IPR029071 -
Tpr4g2918 229 SMART ubq_7 75 146 IPR000626 GO:0005515
Tpr4g2918 229 SMART ubq_7 151 222 IPR000626 GO:0005515
Tpr4g2918 229 SMART ubq_7 1 70 IPR000626 GO:0005515
Tpr4g2918 229 PRINTS Ubiquitin signature 85 105 IPR019956 -
Tpr4g2918 229 PRINTS Ubiquitin signature 106 126 IPR019956 -
Tpr4g2918 229 PRINTS Ubiquitin signature 127 148 IPR019956 -
Tpr4g2918 229 CDD Ubl_ubiquitin 151 226 - -
Tpr4g2918 229 ProSiteProfiles Ubiquitin domain profile. 13 74 IPR000626 GO:0005515
Tpr4g2918 229 PANTHER UBIQUITIN 13 152 - -
Tpr4g2918 229 PANTHER UBIQUITIN 75 227 - -
Tpr4g2918 229 SUPERFAMILY Ubiquitin-like 74 150 IPR029071 -
Tpr4g2918 229 ProSitePatterns Ubiquitin domain signature. 25 50 IPR019954 -
Tpr4g2918 229 ProSiteProfiles Ubiquitin domain profile. 151 226 IPR000626 GO:0005515
Tpr4g2918 229 ProSiteProfiles Ubiquitin domain profile. 75 150 IPR000626 GO:0005515
Tpr4g2918 229 ProSitePatterns Ubiquitin domain signature. 101 126 IPR019954 -
Tpr4g2918 229 Pfam Ubiquitin family 13 72 IPR000626 GO:0005515
Tpr4g2918 229 Pfam Ubiquitin family 77 148 IPR000626 GO:0005515
Tpr4g2918 229 Pfam Ubiquitin family 153 224 IPR000626 GO:0005515
Tpr4g2918 229 ProSitePatterns Ubiquitin domain signature. 177 202 IPR019954 -
Tpr4g2918 229 Gene3D - 151 229 - -
Tpr4g2918 229 Gene3D - 9 74 - -
Tpr4g2918 229 Gene3D - 75 150 - -
Tpr4g2918 229 PANTHER POLYUBIQUITIN 12 75 227 - -
Tpr4g2918 229 PANTHER POLYUBIQUITIN 12 13 152 - -
Tpr4g2918 229 SUPERFAMILY Ubiquitin-like 12 74 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2918 Tpr-Chr4 33274964 33275761 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2918 13 75 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.413 6.38e-39 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2918 - K08770 psom:113290303 421.009