Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2900 ATGACACATATTTTAATCCAAATTTGGAGATGGTTGATGCAGCCAAAGGTGTGGAGATTTATAGGCTTTGCTTCAGCTGTTGTTGGTCTGGTCTGTTATGCTTTAAGCTCTTCCTTCAACTATCTCTTTGGCGATTGGAATTTTCTGAAACTTTTTCTTTATATTATTTTCAGTTTCATCATATGTTTTGTGATTTTATTTGCAAAATTATTGCAACATTCGAGGAGTCTCCGGTTCAAAGCTCATACCGCATTTTTGGTATTGACAATAACCTCTGTTTATTCCTTTTTCTTCGATAAAGTGATGAATGGGAAACCAGATGCATATAGTTTAATTTCATGTGCTGCTTTTGCTATCATGTCATTGAGTTTGTCGAGGCAAACTCAATGTGGATTTGAAATCGATCTTCTCTATTTCTTCCTCGGGTGTCTAATTGTGCAACTCATGAAGATTAAATTGCAGTTATTCATTCTTGGAGCAGGTTTCAGCTACTCTCTTATTATTCTCCGTTCTTTTTTCTCTCCTATTGATGCTAGAGGAGATGATCAATACTCTCAACTCCAGGATGAAAATTCGGTGGTTCTTTATATGAATTCTCTACAACTCGCCAATATTGATATCGCTAGCGATAGCAATAGAATAGATTCATCACAATTGATGATCGCTAATGATATTAGTAGTGTGATGGAACAACTCATGGCTTTTGTGAAGGCACTTCAGCACGAAAGTGTAATTATCATTCAAATGATTTTTGTGCATGTAGAAAAATACTATGCTAAAAAACAATCTCAGTTTGTGTTCAATGACCCTAACTTCATGATGGATGCATTTAAGCTAGAAACTATCAAAGGCCTCGAGAAAACAGCAAAGGTTATGGTATGCTCTGGGTTTGGGAAAGATTTTTCCATTGTGTATAATAGTTGTAGGAGGGAATGCTTGGATAAGTGCCTAAATAGATTATTCAGTTTAGAAAAGTACAACATCCAGGACGTTCATAATATCCCGTGGAAAGAACTCGAAGACAATATTGAAAGTTGGATTCATGCTTCCAATGTTGCTCTAAAGATGCTTTTCCCTGGCGAGCGACAACTCTGCAACCGCATCTTCTTTGGATTCTCATCCGTTGCTGATTTCTCTTTCCTGGACATTTGCAAGGGATGGACCATTCAACTTGTGACTTTTGTCAATGCTATTGCCACCAGAAGCCATTCGCCAGAGCGTTTGTTTAAAATTCTAGAGGTGTTTCAAACATTGTGTGACCTAATTCCGGAATTTGAGTCATTATTTTGTGATCAATACAGTGTCTCTCTAATAAATGAAGCAATGACCATATGGAAGAGACTCAAGGAATCAATCAAAGGCATATTCATGGAGTTGCAGTATCTGATTGGTAAAGATCCAGTTAACGTGACAGTTAATGGTGGCGGTCTTCACCCGATTACCCAGTACGTGATGAACTACCTAAGTGTAGTTTGTCAATCCCGACAAACACTAGAGCAAGTGTTTGAAGATTCCTCATTTTCTCAGACGATTCATAGGATTATGGATATATTGGAGAGTAATTTGGAAATGAAGTCCAAATGCTACGAGGATCCATCTATAGGCTATATTTTCTTAATGAATAACAACACGTATATAGTTCAAGTGACCAAAGATAATGAATTGGGAACCATTTTGGGGTATGATTGGCTCCAAAAACACGCTCTGAAAGTTTGGCACTACTATGGTAGGGAAGTTCAACAATCATCGAACAAAACCCGACACTACGATGGCAGGGAAGTTCTACAATCATTGTACAACGCCCGACAGATTGGTAAAATAGATCGGAGCAATGTGGAAGGTTCCGAAGGATCAAAGGGGTATGAAAGAGATGTGCAATTGATAGAAGCATCACTTACTCAACTAGAAAGAATTGGGACAAAGGACTCAGAGACAGAGATAAGAACAATAGTAATCTCTCCCTCACAACAGTTTGGGATGGCTCATAAAATGTCACCAGACGATGGCTTTACCTGGAAAAAATATAAGGAGAAAGAGATGCTTGACTTCAAATACCCGAGGAGTTACTACATGTGCAACCACATGACTAAATATTCAGGTGGATTCAAGAAGAAAGTACAACAACTTGATGACAATCCAAACATGTTTGAAGTAACATACAAGGGTGGACATTCCTGCTGCATGTCCTTAACAAAGGCATCATTAATTTTACCACCACGAAAAATAAGGAATACCTCAAACTCAAAGGATATCATCACTCAAACCACTATGCCTCCATCATCAACTTCATATTCTAGGTGGCTTTCATCCGCCACACCAGTTAAATCCATAAGCTCTATCCCAGAGGTCAATCTACCTGCTCCGGCCAACGGTGGGCATCATCCTATGATGTACAACGTCGCCGACTATCTTGTTTCTGCTATCAGATCGCAAAAAATCAACTTTGTTAATGCCGACAGAGCATTTTCAACACAAACAGAGGAGCCAATGAAACTGTTAGAAAGCATTCTGGAATGGAAGTCTAAAATTTATGCGGACACTTCGATGCGTCATTTTTTCATGATGAATAATTGGAGGTATTTAGAAGTTGCAATTCAAAGAAGGGAATTGAATGAAATTTTTGGAAATATTTGGTGCCAAAAATTCAGAGTAAAAGTTCAACAAAAGCTTGAACTTTATCAAAGAAACTCATGGGAAAAAGTGTTGGATTTTTTGAAGTTAGATATCAATGACTCCTCCGTGGAAATTAATTTAGCAGTAGATTCGATGAAAGAAAATCTCAGTTGTTTTAACATGCACTTAGCAGAGACACTTAGAATTCAATGCACATGGTCTGTTCATGATGAGAAGCTAAGGGGGGAAATAATTTCATCTCTCAAAAACATCTTGCTGCCTGTGTATGGAACCTTCATTGGGAAGTTTCAAAATTTTCTTAAAAACGATGCTTACGAGTATATCGAGTATGGAATTTTTGATATTGAAGATGTACTTGATAGTTTGTTTCTTGGAAACAAGACAGATGAATGA 3027 0.3773 MTHILIQIWRWLMQPKVWRFIGFASAVVGLVCYALSSSFNYLFGDWNFLKLFLYIIFSFIICFVILFAKLLQHSRSLRFKAHTAFLVLTITSVYSFFFDKVMNGKPDAYSLISCAAFAIMSLSLSRQTQCGFEIDLLYFFLGCLIVQLMKIKLQLFILGAGFSYSLIILRSFFSPIDARGDDQYSQLQDENSVVLYMNSLQLANIDIASDSNRIDSSQLMIANDISSVMEQLMAFVKALQHESVIIIQMIFVHVEKYYAKKQSQFVFNDPNFMMDAFKLETIKGLEKTAKVMVCSGFGKDFSIVYNSCRRECLDKCLNRLFSLEKYNIQDVHNIPWKELEDNIESWIHASNVALKMLFPGERQLCNRIFFGFSSVADFSFLDICKGWTIQLVTFVNAIATRSHSPERLFKILEVFQTLCDLIPEFESLFCDQYSVSLINEAMTIWKRLKESIKGIFMELQYLIGKDPVNVTVNGGGLHPITQYVMNYLSVVCQSRQTLEQVFEDSSFSQTIHRIMDILESNLEMKSKCYEDPSIGYIFLMNNNTYIVQVTKDNELGTILGYDWLQKHALKVWHYYGREVQQSSNKTRHYDGREVLQSLYNARQIGKIDRSNVEGSEGSKGYERDVQLIEASLTQLERIGTKDSETEIRTIVISPSQQFGMAHKMSPDDGFTWKKYKEKEMLDFKYPRSYYMCNHMTKYSGGFKKKVQQLDDNPNMFEVTYKGGHSCCMSLTKASLILPPRKIRNTSNSKDIITQTTMPPSSTSYSRWLSSATPVKSISSIPEVNLPAPANGGHHPMMYNVADYLVSAIRSQKINFVNADRAFSTQTEEPMKLLESILEWKSKIYADTSMRHFFMMNNWRYLEVAIQRRELNEIFGNIWCQKFRVKVQQKLELYQRNSWEKVLDFLKLDINDSSVEINLAVDSMKENLSCFNMHLAETLRIQCTWSVHDEKLRGEIISSLKNILLPVYGTFIGKFQNFLKNDAYEYIEYGIFDIEDVLDSLFLGNKTDE* 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2900 1008 SUPERFAMILY Cullin repeat-like 241 577 IPR016159 -
Tpr4g2900 1008 Gene3D WRKY domain 657 728 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr4g2900 1008 SUPERFAMILY Cullin repeat-like 786 1001 IPR016159 -
Tpr4g2900 1008 SMART WRKY_cls 666 728 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr4g2900 1008 PANTHER EXOCYST COMPLEX COMPONENT EXO70B1 790 1001 - -
Tpr4g2900 1008 PANTHER EXOCYST COMPLEX COMPONENT EXO70B1 24 575 - -
Tpr4g2900 1008 Pfam WRKY DNA -binding domain 667 726 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr4g2900 1008 Gene3D Exocyst complex component Exo70 775 1008 - -
Tpr4g2900 1008 Gene3D Exocyst complex component Exo70 189 626 - -
Tpr4g2900 1008 Pfam Exo70 exocyst complex subunit 811 998 IPR046364 GO:0000145|GO:0005546|GO:0006887
Tpr4g2900 1008 Pfam Exo70 exocyst complex subunit 345 572 IPR046364 GO:0000145|GO:0005546|GO:0006887
Tpr4g2900 1008 ProSiteProfiles WRKY domain profile. 667 725 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr4g2900 1008 PANTHER EXOCYST COMPLEX PROTEIN EXO70 790 1001 IPR004140 GO:0000145|GO:0006887
Tpr4g2900 1008 PANTHER EXOCYST COMPLEX PROTEIN EXO70 24 575 IPR004140 GO:0000145|GO:0006887
Tpr4g2900 1008 SUPERFAMILY WRKY DNA-binding domain 664 727 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2900 Tpr-Chr4 32918987 32924034 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2900 267 585 EXO70 exocyst subunit family AT5G58430 55.488 3.22e-114 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tpr4g2900 Exo70 5.9e-59 CL0295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2900 - - cam:101500706 1115.52