Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2899 ATGGATGGTCTCAACTCTCAATCTCAGTCTCACACAGTCCGAAAACAATTCTTATACACTGTGGACAACATGATGCATATTCTAAATCAAATTGGGAGATGGTTGATGCAGCCAAATTTGTGGAGATTTATAGGCTTCGCGTCAGCTGTTGTTGGACTGCTCTGTTATGCTCTAAGCTCTTCCTTCAACTATCTCTTTGGAGAATGGAATTTGCTGAAAATATTTCTTTATAGTGTTTTCAGTTTCATCATATGCTTGGTGATTTTATTTGCAAAATTATTTCAACATTCGAGAAGTCTCCGGTTCAAAGCTCACACAGCATTTTTGGTATTGACAATCACCTCTGTTTATTCCTTTTTCTTCGATAAAGTGATGAATGGGAAACCAGATGCATATAGTTTAATTTCATGTGCTGCTTTTTCTATCATGTCATTGAGTTTGTCGAGGCAAACTCAATGCGGATTTGAAATTGATCTTCTCTATTTCTTCCTCGGATGTCTAATTGTGCAACTCATGAAGATTAAATTGCAGTTATTCATTCTTGGAGCAGGTTTCAGCTACTCTCTTATTATTCTCCGTTCTTTTTTCTCTTCTATTGATGCTAGAGGACATAATCAATACTCTCAATTCCAAGATGGAAACTCGGTGGTTCTTCATATTGATTCACTAAAACTAGCTAATACTGATATTGCTTGTGCTAGAAGTAGAAATAACATGGATTCACCGCCATTGGTGATCACTACTGATATTAGTAGTGTGATGGAACAACTCTGGACTTTTGTGAAGGCGCTTCAACAAGAAAATTTAAATCTCATTCAGATGGTTTTGGATCATGTAAAAAACTATTGTGAACAACACTCTCCATTGGTGGCGACCGATCCTAACTTCATGATGGATGCGCTGAAGCCAGAAACAATCAAAGGCCTGGAGGAAACAGCGAAGGTTATGGTGAGCGCTGGGTTTGAGAAGGAATTTTCTGATGTGTACAACAGTTGCCGGAGGGAATGCTTGGACAAATGCCTAATGCATAGATTATTCATGTTAAAGAAACTCAGCAGCGAGGACATTCACGATATGCCATGGATGGATCTCGAACACGAGATTAAAATATGGATTAGAGCTTTCAATGTCACCCTTAAGATACTTTTCCCAGGTGAGCGACAACTCTGTGATCGTGTCTTCTCCGGGTTCGCATCTGCAGCTGATTTCTCCTTCATTGAGATTTGCAGGGAATCCATCGTTCAACTTCTAAATTTTGCAGATTCTATTGCAGCCGGAAGTCATTCTCCAGAATGTTTGTTTAACATCATCGAGGTGTTTGAAACATTGCGTGACCTAATTCCAGAATTTGAGTCCTTATTTTGTGATCAGTACAGTGTGTCTCTAAAGAATGAAGCAATTACTATATGGAAGAAACTTGGGAAAGCAATTAGAAGTATTTTCATGGAGTTGGAGTATTTGCTTGACCAAAACTTGACGACGGGGACATATCTCAGCAGTGGTCTTCACCCGATTACTCAACATGTGGTGAACTATCTCCGTGTAGTTTCCCAATCACGGAAAACACTAGAGCAAGTTTTTGACGATTCCTCACTTTCTGGGAAGATTATTAATATTATGGATATATTGGAGAGTAATTTAGAAGCAAAGGCAAAATGCTACGAGGATCCTTCTTTAGGCTATATTTTCTTGATGAATAACAACACTTATATAATTCCGATGACCAAAGATAATGAACTAGGAATCCTTTTAGGGGATGAATGGTTCCAAAAACACACTCTGAAAATTTGGCACTACCATGAACAATATCAGATAACTTTGGGCACTATGCCCCCCACTTTAGTGCAAGATTTTTTCCCATTATTGTACATCAAACAACAGATAAAAGGTGTACGAAGTATCGAAGGATCAAAGGCGTACGAAGGAAATGTGCAGGAAATAGAAGCATTACTCTCTCAGCTACCAAAAAGTAGGAAAATGGAACCGGAGATAGAGATAAGAACAATAGTACTGATCTCTCCTGCACCACACGTTGAAAACATAGAAAAAATGCCACCGAAAGACGGGTTTATCTGGAAAAAATATGGAAAGAAAGAGATACCTGACGTCAAATACCCGAGGAGTTACTATAGGTGCAGCCACATGAATTTAGATGCCTGTCAAGCCAAGAAGAAAGTACAACAACTTGGTGACAATCCAAACGTTTTTGAAGTAACATACAATGGTGCACATTCCTGCCGTAGGTCCTTGACAATACCATCATTATTTTTACCAGCACGAAGGATCTCAAAGGATATGACTCAAACCACCATGCCGGCATCAACTTCATATTCTGAGTGGCTTTCATCGGGCACGCCAGCCAAATACATAAATTCTATCCCAACAGCCAACCTAGCTGCTCCGGAAGACGGTGGGTATCATCCTATGATGGACAACGTCGGGGACTATCTTGTTTCTGCTCTCAGATCACAGCAGATTGTTTCTGCTATCAGATCACAACAGATTTATGCTGTTAATGGAGAAGAAGAATTTTCACCACAAGCAGAGGGGACAATTGAACTGTTAGAGAGCATATTGGCATCGAAGTCCGAAAAATATGTGGATGTGTCTTTGCGTCATTTCTTCATGATGAATAATTGGAGGTATTTAGAAGTGACAAATAATAGATTGGAACTAGATGCAATGTTCGGCTATGTTTGGTTGCAAAGAAACAGAGAAAAAGTCCAACAAAACCTTGAACTCTATAAGAGAGACTCGTGGGATAAGGTGTCGGAATGTTTAAAGTTGGATATAAATGACTCCACGGAAATTAATTTTGCGACAGATTTGATGAAAGAAAAGCTCAATTTGTTTAACATGAAATTTACAGAAACATGTAGTGTTCAGTGCAGATGGTCTGTTCATGATGAGAAGCTAAGGGAAGAAATAATTGAATCTCTCAAAAATACCTTGTTGCCAGCATATGGAACCTTCATTGGGAAGTTTCAGGATTTTCTTAAAAACAAAGCTTACAAGTATATTGAGTATGGAATGTTTGATATTCAAGATGTACTTGATAGTTTGTTTCTTGGAAACAAGAAAGACGTATGA 3090 0.3867 MDGLNSQSQSHTVRKQFLYTVDNMMHILNQIGRWLMQPNLWRFIGFASAVVGLLCYALSSSFNYLFGEWNLLKIFLYSVFSFIICLVILFAKLFQHSRSLRFKAHTAFLVLTITSVYSFFFDKVMNGKPDAYSLISCAAFSIMSLSLSRQTQCGFEIDLLYFFLGCLIVQLMKIKLQLFILGAGFSYSLIILRSFFSSIDARGHNQYSQFQDGNSVVLHIDSLKLANTDIACARSRNNMDSPPLVITTDISSVMEQLWTFVKALQQENLNLIQMVLDHVKNYCEQHSPLVATDPNFMMDALKPETIKGLEETAKVMVSAGFEKEFSDVYNSCRRECLDKCLMHRLFMLKKLSSEDIHDMPWMDLEHEIKIWIRAFNVTLKILFPGERQLCDRVFSGFASAADFSFIEICRESIVQLLNFADSIAAGSHSPECLFNIIEVFETLRDLIPEFESLFCDQYSVSLKNEAITIWKKLGKAIRSIFMELEYLLDQNLTTGTYLSSGLHPITQHVVNYLRVVSQSRKTLEQVFDDSSLSGKIINIMDILESNLEAKAKCYEDPSLGYIFLMNNNTYIIPMTKDNELGILLGDEWFQKHTLKIWHYHEQYQITLGTMPPTLVQDFFPLLYIKQQIKGVRSIEGSKAYEGNVQEIEALLSQLPKSRKMEPEIEIRTIVLISPAPHVENIEKMPPKDGFIWKKYGKKEIPDVKYPRSYYRCSHMNLDACQAKKKVQQLGDNPNVFEVTYNGAHSCRRSLTIPSLFLPARRISKDMTQTTMPASTSYSEWLSSGTPAKYINSIPTANLAAPEDGGYHPMMDNVGDYLVSALRSQQIVSAIRSQQIYAVNGEEEFSPQAEGTIELLESILASKSEKYVDVSLRHFFMMNNWRYLEVTNNRLELDAMFGYVWLQRNREKVQQNLELYKRDSWDKVSECLKLDINDSTEINFATDLMKEKLNLFNMKFTETCSVQCRWSVHDEKLREEIIESLKNTLLPAYGTFIGKFQDFLKNKAYKYIEYGMFDIQDVLDSLFLGNKKDV* 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2899 1029 PANTHER EXOCYST COMPLEX PROTEIN EXO70 802 1022 IPR004140 GO:0000145|GO:0006887
Tpr4g2899 1029 PANTHER EXOCYST COMPLEX PROTEIN EXO70 45 604 IPR004140 GO:0000145|GO:0006887
Tpr4g2899 1029 SMART WRKY_cls 686 748 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr4g2899 1029 SUPERFAMILY Cullin repeat-like 795 1022 IPR016159 -
Tpr4g2899 1029 Coils Coil 898 918 - -
Tpr4g2899 1029 ProSiteProfiles WRKY domain profile. 688 745 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr4g2899 1029 Pfam Exo70 exocyst complex subunit 797 1019 IPR046364 GO:0000145|GO:0005546|GO:0006887
Tpr4g2899 1029 Pfam Exo70 exocyst complex subunit 371 604 IPR046364 GO:0000145|GO:0005546|GO:0006887
Tpr4g2899 1029 Pfam WRKY DNA -binding domain 687 747 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr4g2899 1029 Gene3D WRKY domain 677 748 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr4g2899 1029 PANTHER EXOCYST COMPLEX COMPONENT EXO70B1 45 604 - -
Tpr4g2899 1029 PANTHER EXOCYST COMPLEX COMPONENT EXO70B1 802 1022 - -
Tpr4g2899 1029 SUPERFAMILY WRKY DNA-binding domain 682 747 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr4g2899 1029 Gene3D Exocyst complex component Exo70 787 1028 - -
Tpr4g2899 1029 Gene3D Exocyst complex component Exo70 247 617 - -
Tpr4g2899 1029 SUPERFAMILY Cullin repeat-like 253 605 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2899 Tpr-Chr4 32904850 32918426 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2899 292 604 EXO70 exocyst subunit family AT5G58430 56.211 1.62e-108 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tpr4g2899 Exo70 1.4e-47 CL0295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2899 - - cam:101500706 1200.27