Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2885 ATGGAAAAGGGCGGTGAGGCGACGATAGATCTAAAGCGAGACGGCATTGAGGATCTGAGCGGCCGTGTTCATCTACTTCCCTGCTGTATCAAGCACGACGGTCCCACCGAAGTTTCTCACTATTTCAAACCTAAACCCACCGGCGTCGTCGGAGAAGGTTACTCGAAGGTTACTACTCTTCCTCTTCCTCCTAACTACTCTGGTTTTGTTCTGGGAAAGAAAAATTCGTCTAAAAAATCCGGTGAAAGCTCTGATTCTTGGGAGACTAGTGCTACGTTTAATGATATTACGTATTGGAACCATGACTATGTTCCTTCTCAGAATGATGATTTCTTCCGTTCTTTCCATTGGATTACTGTTGCTAAAGCTGGTTGCTATGTCTGCATTATTATAGGTTATTGTGAGGGTGGAGATATGGCGGAAGCTATAAAGAAGACTAACGGTGTTCTGTTTCCGGAGGAGAAACTTTGCAGATGGCTCGTTCAACTTCTAATGGCACTTGACTACCTGCACATGAATCACATTCTTCATCGTGATGTCAAGTGTTCAAATATCTTCTTGACGAAAGATCGTGACATACGTCTCGGTGATTTTGGACTTGCCAAAATGTTGACTTCTGATGATCTTGCTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGGCTTGA 723 0.4385 MEKGGEATIDLKRDGIEDLSGRVHLLPCCIKHDGPTEVSHYFKPKPTGVVGEGYSKVTTLPLPPNYSGFVLGKKNSSKKSGESSDSWETSATFNDITYWNHDYVPSQNDDFFRSFHWITVAKAGCYVCIIIGYCEGGDMAEAIKKTNGVLFPEEKLCRWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLA* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2885 240 Pfam Protein kinase domain 122 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2885 240 Pfam Ribonuclease H2 non-catalytic subunit (Ylr154p-like) 82 123 IPR013924 GO:0006401|GO:0032299
Tpr4g2885 240 Pfam Ribonuclease H2 non-catalytic subunit (Ylr154p-like) 23 46 IPR013924 GO:0006401|GO:0032299
Tpr4g2885 240 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 123 239 - -
Tpr4g2885 240 SMART serkin_6 41 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2885 240 Gene3D - 3 123 - -
Tpr4g2885 240 PANTHER SERINE/THREONINE-KINASE NEK4 123 239 - -
Tpr4g2885 240 SUPERFAMILY Protein kinase-like (PK-like) 121 239 IPR011009 -
Tpr4g2885 240 ProSiteProfiles Protein kinase domain profile. 44 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2885 240 Gene3D Transferase(Phosphotransferase) domain 1 124 240 - -
Tpr4g2885 240 CDD RNase_H2-C 24 102 IPR013924 GO:0006401|GO:0032299
Tpr4g2885 240 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2885 Tpr-Chr4 32789469 32792579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2885 117 239 MAP Kinase Kinase Kinase AT3G13530 37.903 3.29e-21 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Tpr4g2885 Pkinase 3.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2885 K08857 - var:108344160 239.965