Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2877 ATGACCCATATAGTTAGGGAGGTTGAGAAACCTGGATCAAAGCTTCATAAGAAGGAGACATGTGAAGCTGTCACCATCATTGAAACTCCTCCAGTTGTTGTTGTTGGAGTGGTGGGCTATGTTAAGACACCACGAGGTCTTTGCACACTGAATACTGTTTGGGCTCAGCATCTTAGTGAAGATATCAAGCGCCGGTTTTACAAGAACTGGTGCAAATCAAAGAAGAAAGCTTTTACCAAATATACCAAGAAATATGAAACTGACGAAGGAAAGAAAGATGTTCAAACTCAGCTTGAGAAATTGAAAAAGTATGCCACTGTCATTCGTGTTCTTGCTCATACTCAGATAAGGAAGTTGAAGGGTCTAAAACAAAAGAAAGCTCATTTGATGGAGATCCAAGTTAATGGTGGAACAGTAAGCCAGAAGGTGGACTATGCATATGATTTCTTTGAAAAGCAAATCCCTGTTGATGCTGTTTTTCAAAAGGATGAGATGATAGATATCATTGGAGTGACCAAAGGTAAAGGTTATGAAGGTGTGGTAACTCGTTGGGGTGTCACTCGCCTTCCACGAAAGACACACAGAGGTCTCAGGAAGGTTGCTTGTATTGGTGCCTGGCACCCTGCTCGTGTTTCTTTCACAGTTGCCAGGGCTGGGCAGAATGGATATCATCATCGTACTGAGTTGAATAAGAAGATCTACAAGGTTGGCAAGACTGACCAAGAGTCACATACAGCCATCACTGAATTTGACAGGACTGAGAAGCATATTACGCCTATGGGTGGATTCCCTCATTATGGTATTGTGAAGCATGATTATCTTATGATCAAGGGATGCTGTGTTGGACCAAAGAAGCGGGTTGTCACTCTTCGTCAGTCACTACTCAAGCAGACTTCTCGATTGGCTCTTGAAGAGATCAATCTGAAGTTCATTGACACGTCCTCCAAGTTTGGACATGGCCGCTTCCAGACTATGCAGGAGAAACAAAAGTTTTATGGCCGGTTGAAGGCGTAA 1014 0.43 MTHIVREVEKPGSKLHKKETCEAVTIIETPPVVVVGVVGYVKTPRGLCTLNTVWAQHLSEDIKRRFYKNWCKSKKKAFTKYTKKYETDEGKKDVQTQLEKLKKYATVIRVLAHTQIRKLKGLKQKKAHLMEIQVNGGTVSQKVDYAYDFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKVGKTDQESHTAITEFDRTEKHITPMGGFPHYGIVKHDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEINLKFIDTSSKFGHGRFQTMQEKQKFYGRLKA* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2877 337 SUPERFAMILY Translation proteins 1 318 IPR009000 -
Tpr4g2877 337 Gene3D Ribosomal protein L3, domain 3 174 222 IPR044892 -
Tpr4g2877 337 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 337 IPR045077 GO:0003735|GO:0005840|GO:0006412
Tpr4g2877 337 ProSitePatterns Ribosomal protein L3 signature. 160 183 IPR019926 -
Tpr4g2877 337 Pfam Ribosomal protein L3 1 318 IPR000597 GO:0003735|GO:0005840|GO:0006412
Tpr4g2877 337 Coils Coil 334 337 - -
Tpr4g2877 337 Gene3D - 31 155 - -
Tpr4g2877 337 PANTHER 60S RIBOSOMAL PROTEIN L3-1 1 337 - -
Tpr4g2877 337 Gene3D Translation factors 1 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2877 Tpr-Chr4 32663071 32665247 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2877 1 335 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 84.776 0.0 586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2877 K02925 - gmx:100792174 615.535