Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2876 ATGAAGTCATTTACAGATTTGGGCTTATCTTTTGAATTGGTGGAAGCTTGTGAAAAAAACCTGGTTTGGTATGATCCGACGAAGATTCAGAGAGAAATGATTCCCCTTGCACTACAAGGAAAAGATGATGTGTTTGCAATTTCCCCACCGCGTTCCGGTAAGGTTGGGGATTTTGTTCTTCCTATATTGCATACCCTCTTAGAAACCAGACCGAACCTAAACACTTTCTTTGCTTGTGTGCTATCTCCTACAAGGCACCTTGGTGTTCAAATTGCTGAATACTTTTTTGCTCTAGGATCTCAATTTGGTGTCAATGACGGTGCTAGTAGGGGAGGATACTTAGAACAGGAGGATGTCCGTAAGATCCAAGGTTTTCGTCAACGAATATGTGAAGATAAGCAGGTGCATTCAGGTCATAAAATTCATGATTGTGATGAAGTTGGAGATAAGGATGGAGTGAGCTATGAAGACATTGAAGAATCAGAGCTAGACTAA 495 0.4101 MKSFTDLGLSFELVEACEKNLVWYDPTKIQREMIPLALQGKDDVFAISPPRSGKVGDFVLPILHTLLETRPNLNTFFACVLSPTRHLGVQIAEYFFALGSQFGVNDGASRGGYLEQEDVRKIQGFRQRICEDKQVHSGHKIHDCDEVGDKDGVSYEDIEESELD* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2876 164 Pfam DEAD/DEAH box helicase 27 119 IPR011545 GO:0003676|GO:0005524
Tpr4g2876 164 PANTHER BNAC02G41920D PROTEIN 2 104 - -
Tpr4g2876 164 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 2 31 IPR014014 GO:0003724
Tpr4g2876 164 Gene3D - 1 131 IPR027417 -
Tpr4g2876 164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 121 IPR027417 -
Tpr4g2876 164 PANTHER RNA HELICASE 2 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2876 Tpr-Chr4 32651365 32652855 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2876 1 131 Eukaryotic Initiation Factors Gene Family AT3G19760 26.087 1.29e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2876 K14777 - gmx:100775796 117.857