Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2874 ATGACGGTATCAGTAGGAGAACAAATATACACTAGCTATTATTCTCCGATAGGAGCTAGAGTGAAGTGTCTCTCATATGCTGGTTACTTTATCAACACAAGGGATGTCTCTGGAACTCAGCACATTAAACAATTCTTCAGTCAAATTGTTACAAAACATGGCTCTGCAGGGAATTTGCCTAGATCATGCATTTCAAGACTCAGTCCAAGGCTGTGCTTTTTCCCTCAATATGTTGTATCACAAATCACCACACCAATCTTCTTTGTAAACGCGACATATGACTCATGGCAGATTAAGAACATTTTGGCACCAGGTGTTGCTGATCCTCATGGGCACTGGCATAGCTGCAAGCTAGATATAAACAACTGCTCTTCTAATCAACTTGATCTAATACAAGGCTTTAGAACACAATTTCTAAGAACATTGACTTTTTTTTTGGTAAGCAAAGAGAGCATTGACTGTAGTTCTTGTTCTTATGTTCCAAAAGGCTATTGA 495 0.3879 MTVSVGEQIYTSYYSPIGARVKCLSYAGYFINTRDVSGTQHIKQFFSQIVTKHGSAGNLPRSCISRLSPRLCFFPQYVVSQITTPIFFVNATYDSWQIKNILAPGVADPHGHWHSCKLDINNCSSNQLDLIQGFRTQFLRTLTFFLVSKESIDCSSCSYVPKGY* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2874 164 Pfam Pectinacetylesterase 16 146 IPR004963 GO:0016787
Tpr4g2874 164 PANTHER NOTUM-RELATED 16 146 IPR004963 GO:0016787
Tpr4g2874 164 PANTHER PECTIN ACETYLESTERASE 16 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2874 Tpr-Chr4 32615230 32617030 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2874 16 139 Carbohydrate Esterase AT4G19420 65.323 3.02e-58 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2874 K19882 - gmx:100776478 216.083