Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2872 ATGGGGGTTGAAGTTTGCATGAATAAATTGTGTAAGGAAAGTTCTATTGGTGAATGGAAGAAAGGTTGGTCTTTGATCTCTGGTGGATTTGCAAAACTCTGCAACAAATGCGGACTTGCCTATGAGAATTCAGTTTTCTGCGATCAATTTCACCGTCTTGAAGCCGGTTGGAGGGAATGCAACAATTGCAAGAAGCTTATCCACTGCGGATGTATAATATCAAAGTCTTTGTTCGAGTACCTTGATTTCGGTGGCATAGGTTGTGTTACCTGTGTTAAGGCTTCCCAGCTTTGTCTGGATACTGGAAATGCTAATAGGTTTGCTCATATAACTAAAAACAATGCAAATGATCGATATGCTGAACATACTGATGGTGGACTATCGGTGGAACGTGTTGGTAAAGGAAACCTTATGCAGTTACGGAAAACTGCTGAAGCTGGTGAAACAAGCTTTTGGCCACAAGCTCAAAGAGATGGTGTGCTTTCGAGTATTGGTTCAAAAAGCGAAGAAATTAATTGTCGATTCAACAAAACTGATACAGGATTTTTAAATGTGATGAAACATTCTAGTCATTTATCAGCACTTACTACATCAGAAAATAATAGACCAACATGGGAGACCAAAAGTAGAGATGAATCACTTTCGCTGAAGATTTCTCTTGGAACCTCATCGAGAAATTGTGTCCTGCCCTCTGCCAAAGAGATTGTAGAAGGTAAACTTGAGGGTAAAGCATCTTCTATTTCTCAACAAGGGCACAATTCTTACCCCATATTGGCTAAACAACCGAAGACCGGTATTACATTGAATCTTGAAACAAATAAAGGCATGATTTCTCTTCCACGCATTGGTCGACCACCTGCTGATGTGAAAGGGAAAAATCAGTTACTTTCTCGATACTGGCCGAGGATTACTGATCAAGAGCTGGAGAAATTGTCTGGGGATTTGAAGTCTAAGATAGTGCCCTTATTTGAGAAGGTGTTAAGTCCGAGTGATGCAGGTCGAATTGGTCGTCTTGTTCTCCCAAAAGCTTGTGCTGAGGCTTTTCTTCCTCCTATTGATCAATCGGAAGGTGTCCCTTTACTGTTCCAAGATATAAAGGGGAACGAGTGGACCTTTCAGTTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTAGAGGGTGTGACCCCGTGCATACAATTCTTGCGGTTAAATGCTGGCGATACTGTGACATTTAGTCGGATAGATTCCGGAGAAAAATTTGTACTTGGTTTTAGAAGAGCATCGGGTTCTACCGATACGCAGGATGACTCTACATCTGCTCATTCTAACGGGATTTCGACTAAGGATACAAATGTTTCTGGTGCAACTAAAAATCTGAACTCGTTAAGTAGTTTTTCTGATCTTCTTCAATCAATGAAAGGTAACAGGGAACCTTACTTAAATGGACATTCAAAACATCTGCATTTGGGTAATGGAACTGCTGATTGGCTGAAAACTGCACATTGTGAGGAGGCGGCGAATAATGGTCCATTGCAGCAACAGGTTTCGGTTTCAGATAAGAAAAAGACTTGCAAGATTGGGACGAAAACTAAGAGGTTGCACATTCGTAGTGAAGATTCTTTGGAGTTAAGACTTACATGGGAAGAAGCACAAGACTTGCTTTGTCCGCCGCCTAATGTCAAGCCAAATATTGTACAAATTGACGACCAAGTATTCGAAGAATATGATGAACCCCCGGTTTTCGGAAAGGGAACTATAACCAATGCCTGTCCATCTGGCTCTCCATGTTCTGCATCAGAGCAGCTCGGTCCAAACGAACAAGAAAATCTTCAGCGAACCAGAAAAGCTTCTAAAAAGCGAAAAATTGTAGAAAAGAGTAACTCAATTGAAGAAGACAAGCTTCAAGACCTAGATACTCTTGCAAGTATGGCAATTTTAGGAGACAATCTTGCTGACCTTGACGAGCCAACTTCAGCTGGAATCACCACAAAACATCCGAGACATCGTGATGGATGCACTTGTATCGTCTGCATTCAATCCCCAAGTGGACAAGGAAAACATAAACCGACATGCACTTGCCTTGCCTGCGAAACTTTGAAGCGCAGGTCCAAGACTCTTATGATGCGTAAGAAGAAAAACCAATCAGAATCTGAAGCAGCCGCTCCCCAAAATGATCAAACGAATCATAGCGGTGAAGCAGATACCAGTGGTGATGCATCAAGACAAGATACAAGTAACTCAATGGACGAGGTAAGCCTAAACGGTGGTCAGAAAGAGGCTGTTGAGCCTAGTGCCGCGGGACAATTAGATTTGAATTGTCATCCCGATCATGAAGATATGTAA 2331 0.4178 MGVEVCMNKLCKESSIGEWKKGWSLISGGFAKLCNKCGLAYENSVFCDQFHRLEAGWRECNNCKKLIHCGCIISKSLFEYLDFGGIGCVTCVKASQLCLDTGNANRFAHITKNNANDRYAEHTDGGLSVERVGKGNLMQLRKTAEAGETSFWPQAQRDGVLSSIGSKSEEINCRFNKTDTGFLNVMKHSSHLSALTTSENNRPTWETKSRDESLSLKISLGTSSRNCVLPSAKEIVEGKLEGKASSISQQGHNSYPILAKQPKTGITLNLETNKGMISLPRIGRPPADVKGKNQLLSRYWPRITDQELEKLSGDLKSKIVPLFEKVLSPSDAGRIGRLVLPKACAEAFLPPIDQSEGVPLLFQDIKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQFLRLNAGDTVTFSRIDSGEKFVLGFRRASGSTDTQDDSTSAHSNGISTKDTNVSGATKNLNSLSSFSDLLQSMKGNREPYLNGHSKHLHLGNGTADWLKTAHCEEAANNGPLQQQVSVSDKKKTCKIGTKTKRLHIRSEDSLELRLTWEEAQDLLCPPPNVKPNIVQIDDQVFEEYDEPPVFGKGTITNACPSGSPCSASEQLGPNEQENLQRTRKASKKRKIVEKSNSIEEDKLQDLDTLASMAILGDNLADLDEPTSAGITTKHPRHRDGCTCIVCIQSPSGQGKHKPTCTCLACETLKRRSKTLMMRKKKNQSESEAAAPQNDQTNHSGEADTSGDASRQDTSNSMDEVSLNGGQKEAVEPSAAGQLDLNCHPDHEDM* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2872 776 Pfam B3 DNA binding domain 323 423 IPR003340 GO:0003677
Tpr4g2872 776 SMART B3_2 323 424 IPR003340 GO:0003677
Tpr4g2872 776 Gene3D - 301 427 IPR015300 -
Tpr4g2872 776 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 591 776 - -
Tpr4g2872 776 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 590 - -
Tpr4g2872 776 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 591 776 - -
Tpr4g2872 776 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 590 - -
Tpr4g2872 776 MobiDBLite consensus disorder prediction 713 749 - -
Tpr4g2872 776 MobiDBLite consensus disorder prediction 427 448 - -
Tpr4g2872 776 MobiDBLite consensus disorder prediction 703 776 - -
Tpr4g2872 776 CDD B3_DNA 321 422 IPR003340 GO:0003677
Tpr4g2872 776 MobiDBLite consensus disorder prediction 595 615 - -
Tpr4g2872 776 ProSiteProfiles B3 DNA-binding domain profile. 323 424 IPR003340 GO:0003677
Tpr4g2872 776 SUPERFAMILY DNA-binding pseudobarrel domain 320 422 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2872 Tpr-Chr4 32574812 32581402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2872 3 707 B3 DNA Binding Superfamily AT4G32010 41.611 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr4g2872 B3 1.5e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2872 - - lang:109356710 865.529