Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2868 ATGGGTAAGAAGGTGAAGCTTGCATTCATAACCAGGGACACAGCCAGAAAAGCAACATACAAGAAAAGGGTAAAAGGTTTGATGAAGAAGCTCAATGAAATCACAACTCTATGTGAAATTAAGGCATGTGCTATAGTGTTCAATCCTGAGGATCTTGAACCACAAATTTGGCCATCCATTCAAGGAGTTCAAAGTGTGCTGACCCAATTCTTGCATGTCCCCGAATTCGTTCGGCATCGAAAGATGTTAAACCATGAGAGTTACTTGAAGGAAAAGACTCAAAAGCTGAATGAGAAGCTAAAGAAACAAATGAAGGAGAATAGGGAGATGAAGATGATTCTTCAAATGTATCACTACCTTGAGAAATGGAACATTCCTGAGGATTTAAGTATTGTTGATCATAATGATCTCACATATGTGATTGATGAGAAAATGAAGGAAATTAATATGAAGATGATGGAAATGGACATCAATGATCAAAGGGTATAG 489 0.3742 MGKKVKLAFITRDTARKATYKKRVKGLMKKLNEITTLCEIKACAIVFNPEDLEPQIWPSIQGVQSVLTQFLHVPEFVRHRKMLNHESYLKEKTQKLNEKLKKQMKENREMKMILQMYHYLEKWNIPEDLSIVDHNDLTYVIDEKMKEINMKMMEMDINDQRV* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2868 162 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 9 50 IPR002100 GO:0003677|GO:0046983
Tpr4g2868 162 PANTHER MADS BOX PROTEIN 2 155 - -
Tpr4g2868 162 CDD MADS_SRF_like 1 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tpr4g2868 162 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Tpr4g2868 162 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 155 - -
Tpr4g2868 162 PRINTS MADS domain signature 2 22 IPR002100 GO:0003677|GO:0046983
Tpr4g2868 162 PRINTS MADS domain signature 22 37 IPR002100 GO:0003677|GO:0046983
Tpr4g2868 162 PRINTS MADS domain signature 37 58 IPR002100 GO:0003677|GO:0046983
Tpr4g2868 162 Coils Coil 90 110 - -
Tpr4g2868 162 SUPERFAMILY SRF-like 3 93 IPR036879 GO:0003677|GO:0046983
Tpr4g2868 162 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Tpr4g2868 162 Gene3D - 13 123 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2868 Tpr-Chr4 32451446 32451985 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2868 3 152 Type I MADS-box Gene Family AT5G48670 46.667 2.16e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr4g2868 SRF-TF 9.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2868 - - cam:101507243 200.29