Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2865 ATGGGTGGAAAGAAAGTGAAACTTGCATTCATAACCAAGGACACAACAAGGAAAGCAACATATAAAAAAAGGGTAAAAGGTTTGATGAAGAAGCTCAATGAAATCACAACTCTATGTGAAATTAAGGCATGTGCTATAGTGTTCAATCCTGAAATTGTTGAACCACAAATTTGGCCATCCATCGAAGGAGTTCAAAGTGTGCTGAACCAATTCATCCATGTTCCAAAATTTGATCGAGGCCGAAAGATGTTGAACCATGAGAGTTACTTGAAGGAAAAGATCGAAAAGTTGAGTGAGAAGTTGACGAAAAAAACGAAGGAGAATAGGAAGATGAAGATGACTATTCAAATGTATCACTTTCTTGAGAAAGGGAACATTGAGGGTTTAAGTACCGTTGATCATGATGACCTCACATATGTGATTGATGAGAAAATGGAGGAAATTAATATGAAGATGATGGAAATGGAGATCAATGATCAAAGGGCTCCAAGGTTTGTGAATGGTAGCTAA 510 0.3706 MGGKKVKLAFITKDTTRKATYKKRVKGLMKKLNEITTLCEIKACAIVFNPEIVEPQIWPSIEGVQSVLNQFIHVPKFDRGRKMLNHESYLKEKIEKLSEKLTKKTKENRKMKMTIQMYHFLEKGNIEGLSTVDHDDLTYVIDEKMEEINMKMMEMEINDQRAPRFVNGS* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2865 169 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Tpr4g2865 169 Gene3D - 14 124 IPR036879 GO:0003677|GO:0046983
Tpr4g2865 169 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Tpr4g2865 169 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr4g2865 169 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 156 - -
Tpr4g2865 169 Coils Coil 94 114 - -
Tpr4g2865 169 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tpr4g2865 169 PANTHER MADS BOX PROTEIN 3 156 - -
Tpr4g2865 169 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2865 Tpr-Chr4 32428848 32429445 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2865 1 152 Type I MADS-box Gene Family AT5G48670 44.805 2.95e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr4g2865 SRF-TF 2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2865 - - cam:101507243 196.438