LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr4g2849	ATGTTTGGATGTCCTCCAGAGACAGAAAGACTAGATGAAATAGCAAAAATCAATTCAGAGGGAGAAACATCATCTCAAATGGGAAGGAAGCATTTTCATGGCCAAGTTATTGGAACAACCTTAAACACAGTAACTCCTTGTGCTGCATGTAAGCTATTGAGAAGAAGGTGTGCTGAGGAATGCCCTTTCTCTCCTTACTTTTCACCACATGAGCCTCATAAATTTGCAGCTGTTCATAAAGTGTTTGGTGCAAGCAATGTCTCCAAATTGCTATTGGAGGTACCTGAAGGACAAAGAGCAGATGCAGCAAATAGTATGGTTTATGAAGCAAATTTAAGGTTAAGAGATCCTGTTTATGGATGCATGGGTGCAATATCAACATTACAACAACAAGTTCAATCTTTACAAGCAGAACTTCATGCAATTAGAGCTGAAATACTAAAATATAAATATAGAGAAGCAGCTTCTTTTATTTCTTCTCAACAAGTATCAATCCCTACAAATGCAAACTCACAAGGTCTTTCTCAACCTCTTGTTCTTCCTACTTTAGATCCTCCATCTCCTTCTCTTCCTCCACCACAAAAAGTATTAGCTTCTCAATCCATTATCCTTTCGTCGTTGTCTTCGTCTTCGGGTTCCTCTGTCTACACTACATCTAAGAGTACAATGAGTCATGGATCTATTTCTAGTGAAAATATTCCATATTTTATTTAG	714	0.3768	MFGCPPETERLDEIAKINSEGETSSQMGRKHFHGQVIGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKLLLEVPEGQRADAANSMVYEANLRLRDPVYGCMGAISTLQQQVQSLQAELHAIRAEILKYKYREAASFISSQQVSIPTNANSQGLSQPLVLPTLDPPSPSLPPPQKVLASQSIILSSLSSSSGSSVYTTSKSTMSHGSISSENIPYFI*	238

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr4g2849	237	PANTHER	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	31	236	-	-
	Tpr4g2849	237	ProSiteProfiles	LOB domain profile.	45	146	IPR004883	-
	Tpr4g2849	237	PANTHER	LOB DOMAIN PROTEIN	31	236	-	-
	Tpr4g2849	237	Pfam	Lateral organ boundaries (LOB) domain	46	142	IPR004883	-
	Tpr4g2849	237	Coils	Coil	125	145	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr4g2849	Tpr-Chr4	32222040	32223892	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr4g2849	38	162	AS2 family	AT2G30340	80.800	3.09e-73	222

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LOB	Tpr4g2849		LOB	3.6e-40	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr4g2849	-		-	ccaj:109795340	311.227