Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2839 ATGATGAATACTCTAATCCAAATTTGGAGATGGGTTATGCAGCCAAAGGTGTGGAGATTTGTATGTTCTGTTTCAGCTGTTATTGGACTGCTCTGTTATGGTCTCAGCTCTTCCTTCAACTATCTCTTTGGACATTGGAATGTCTTGAAGATTGTTCTATATAGCCTTTTCAGCTTCATCATCGGCTTCTTGAATTTATTTGCAAACAAATGGCAACACTCAACAAGTCATTGGATTAAAGCTCACGCAGCTTTTTTGGTATTAACAATCACTACACTCTACTCATTCTTCTTCGATAAATTAATGAAGGGAAAACCAGATGCATATAGTCTACTTTCATGTGCTGCTTTTGCTATCATGTCACTGAGTTTGTCGCGGGAAACTCAGTCCGGATTCAAAATCGATCTTATGTATTTTTTCCTTGGAAGTCTAATTCTGCAACTGATGAAGATTAAATTGATATTATTCATTCCAGGAGCAGGTTTCGGTTACTTAATTGTTATTCTTCGTTCTTATTTCTCTTCTATAAATGATGCAATTCAAGCTGAGTCACATTCACATTCACTACAATTGGCCAGTATTACTGATAATGACGATCCCACTAGTCTTCAAGATGAAAATCTGAATGTTATTGTCAATCCACATTCAACACAACTGACCAGTACTGATATTGGAAGTAGTATGCTGGAACAACTCAGTGATTATGTGAAAGCACTTCAGCAAGAAAATTCAACTCTCATCGAAATGCTTATGGAGAAGTTGAAGGATTACCTAAGTGATGATTCTGCATTTAGTGGATTTAATGTGTCCGAGGACACGGACTTCATGATCATGGCGCTGCCAACTGAAACAATCGACAACATTCACAAAACAGCCAAGTTGATGGTTAGTGCCGGTTTTAAGAGGGAATTCTCGGACGTGTACAGCAGTTCCCGAAGGGATTGTTTGGTCGAAAGCCTCTCAAGATTAGGGTTCAAGAAACTCACCATTGAAGACCGTCGGATGTTGTCATGGAAAGAAATCGAAAACAAGATTGTAAGATGGATCAAAGCTTCCAACGTGGCTTTGAAGATATTGTTACCCACTGAAAGGAAACTCTGCGATCGGGCTTTCTTTGGGTTCTCCTCCACTGCTGATTTGTCATTTATGGGTGTTTGTTGTGAATCCGCACTTCAGCTGCTGAATTTCGCGGATGTTATTGCCATTGGAAGCGGATCACCAGAGCAGTTGCATAGAGTCCTCAAGGTGTTCGAAACAATGCGTGACCTAATAATTCCAGAGTTTGAGTCTTTGTTCCGTGATCAATACAGTGCATCCCTGCAAAAGGAAGCAATCACAGTTTGGAAGAGATTGGGGGAAGGGATCAGAGGCATTTTCACGGAGTTTACGAATCTGATTCAGCAAATTTCAGCTGAGGAAGTAAATCTCGATGCGGAAATTCACCCGATCACCATTCACGTGATGAATTATCTCTGTGCTGCTAGTCAGTCACGGAAGACCCTGGAGCAAGTGTTCGAAGGAGATTATGGGGATCTATTGAAGGAATATCCTAAAATTGAGGATAGAGTGCAATCCTCTTCCAATGTCTCAGGGCAGATGGGTTTGATTATGGAGCTATTAGAGAGCAAGTTGATAGCCGAATCCAAACTCCATAGCAGGCTGACTGATTTGTCTCTACGATTCTTGATCAGAAACGTTGACTACATTGTTCAAAAGGCTAAAGAGTGTGAATTAGGAACCATTTTAGGAGATGATTGGTTCAAAAATCAGGCTACCCAATTTAACCAAGAGATAAAACAAAAAGAAGAGGAACTGCTGTCAAAAAAGCTAAAACAAAAACAAGACGAACTGCTGTTGAAAAAGCAAAAACAAAAAGAAGAAGTACTGCTGTCAACCGCAGGTGTTAAGCTACCACAAATGGCCCAAGTGTTTAGAAGAAGAGGTTGA 1947 0.4027 MMNTLIQIWRWVMQPKVWRFVCSVSAVIGLLCYGLSSSFNYLFGHWNVLKIVLYSLFSFIIGFLNLFANKWQHSTSHWIKAHAAFLVLTITTLYSFFFDKLMKGKPDAYSLLSCAAFAIMSLSLSRETQSGFKIDLMYFFLGSLILQLMKIKLILFIPGAGFGYLIVILRSYFSSINDAIQAESHSHSLQLASITDNDDPTSLQDENLNVIVNPHSTQLTSTDIGSSMLEQLSDYVKALQQENSTLIEMLMEKLKDYLSDDSAFSGFNVSEDTDFMIMALPTETIDNIHKTAKLMVSAGFKREFSDVYSSSRRDCLVESLSRLGFKKLTIEDRRMLSWKEIENKIVRWIKASNVALKILLPTERKLCDRAFFGFSSTADLSFMGVCCESALQLLNFADVIAIGSGSPEQLHRVLKVFETMRDLIIPEFESLFRDQYSASLQKEAITVWKRLGEGIRGIFTEFTNLIQQISAEEVNLDAEIHPITIHVMNYLCAASQSRKTLEQVFEGDYGDLLKEYPKIEDRVQSSSNVSGQMGLIMELLESKLIAESKLHSRLTDLSLRFLIRNVDYIVQKAKECELGTILGDDWFKNQATQFNQEIKQKEEELLSKKLKQKQDELLLKKQKQKEEVLLSTAGVKLPQMAQVFRRRG* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2839 648 Pfam Exo70 exocyst complex subunit 347 602 IPR046364 GO:0000145|GO:0005546|GO:0006887
Tpr4g2839 648 PANTHER EXOCYST COMPLEX COMPONENT EXO70B1 24 600 - -
Tpr4g2839 648 SUPERFAMILY Cullin repeat-like 227 602 IPR016159 -
Tpr4g2839 648 Coils Coil 591 627 - -
Tpr4g2839 648 Coils Coil 229 249 - -
Tpr4g2839 648 Gene3D Exocyst complex component Exo70 221 639 - -
Tpr4g2839 648 PANTHER EXOCYST COMPLEX PROTEIN EXO70 24 600 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2839 Tpr-Chr4 32158021 32161350 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2839 272 596 EXO70 exocyst subunit family AT5G58430 54.462 1.90e-100 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2839 - K07195 cam:101500706 572.392