Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2827 ATGGAATCCTATAGTTCTTCCAATTTGCTCAAAGCTCAAAGCCACATATGGAATCATATTTGCAACTTCATAAATTCCATGTCACTAAAATGTGTTGTTGATTTAGGCATACCAGATATCATACACAATTATGGAAAACCCATGCCACTCTCAAAACTCACTTCTTCACTACCAATCCACCCTTCGAAAAAACCATGCATCCCTCGCTTGATGCGAGTCATGACTCAGGCTGGCTTTTTCGTTGAACATAATGTTAACGATAATGAGTTAGAAATTGAGTATATGCTTACCGATGAATCTATACTATTGCTTAAGGATCACCCAATGAGTGTGACGCCCTTTTTGCAAGCAGTACTCCATCCAATTTTGGCGAACCCGTGGCATGAATTGTCAACTTGGTTAAAAACCGATGATCCTACGACATTTGAAACTGCACATGGAATGTTGATATGGGATTATGCGGCGCGTGAGCCTGCCTTTAACAACTTATTCAATGATGCAATGGCGAGTGATGCTCGATTGGTCACTAGTGTGGTGATTGAGAAATGCACCGGAGTGTTCAACGGTTTGGAGTCATTGGTTGATGTTGGAGGAGGCACCGGGACCATGGCAAAGGCGCTTGCTAAATCATTCCCAAAAATGGAGTGCACTGTATTTGATCTCCCACATGTTGTTGATGGCTTGCAAGGAAGTGATAACTTAAACTACGTTGGTGGAGATATGTTTAAGAAAATTCCTCCGGCTGATGCCATTTTGTTGAAGTGGATATTACATGATTGGAATGACGAAGAATGTGTAGAGATATTAAAAAAGTGTAAGGATGCAATCGCGAACAAAGGTAAAAAAGCGAAGGTGATTATCATAGATATGGTGGTCGACAAAGAGAAGGGAAATGGTGAATCGGTTGAAACACAACTCTTCTTTGATATGCTCATGATGGTGTTGGCCTCCGGAAAAGAAAGAACCAAGAAAGAATGGATTAAGTTGATTTCTTCAGCTGGTTTCAGTGACTATAAGATCACTCCAATTTTAGGACTAAGATCACTCATTGAAATTTATCCTTAA 1065 0.4028 MESYSSSNLLKAQSHIWNHICNFINSMSLKCVVDLGIPDIIHNYGKPMPLSKLTSSLPIHPSKKPCIPRLMRVMTQAGFFVEHNVNDNELEIEYMLTDESILLLKDHPMSVTPFLQAVLHPILANPWHELSTWLKTDDPTTFETAHGMLIWDYAAREPAFNNLFNDAMASDARLVTSVVIEKCTGVFNGLESLVDVGGGTGTMAKALAKSFPKMECTVFDLPHVVDGLQGSDNLNYVGGDMFKKIPPADAILLKWILHDWNDEECVEILKKCKDAIANKGKKAKVIIIDMVVDKEKGNGESVETQLFFDMLMMVLASGKERTKKEWIKLISSAGFSDYKITPILGLRSLIEIYP* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2827 354 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 108 352 IPR029063 -
Tpr4g2827 354 PIRSF O-mtase 1 354 IPR016461 GO:0008168
Tpr4g2827 354 SUPERFAMILY "Winged helix" DNA-binding domain 7 108 IPR036390 -
Tpr4g2827 354 PANTHER O-METHYLTRANSFERASE 5 354 IPR016461 GO:0008168
Tpr4g2827 354 Gene3D Vaccinia Virus protein VP39 104 354 IPR029063 -
Tpr4g2827 354 Pfam Dimerisation domain 27 75 IPR012967 GO:0046983
Tpr4g2827 354 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 17 354 IPR016461 GO:0008168
Tpr4g2827 354 CDD AdoMet_MTases 193 281 - -
Tpr4g2827 354 Pfam O-methyltransferase domain 127 336 IPR001077 GO:0008171
Tpr4g2827 354 Gene3D - 1 103 IPR036388 -
Tpr4g2827 354 PANTHER O-METHYLTRANSFERASE 5 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2827 Tpr-Chr4 32022314 32023804 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2827 27 340 Monolignol Biosynthesis Gene Families AT5G54160 31.348 4.55e-49 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2827 - K16040 mtr:MTR_5g074610 585.874