Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2824 ATGGAATCCCAATATGGAGAGCATGTTGCTTCTTCCAATTTGCTCAAAGCTCAAAGTCACGTATGGAATCACATTTTCAACTTCATAAATTCCATGTCACTTAAATGTGTTGTTGATTTAGGCATACCTGATATCATACACAATTATGGTAAACCTATGTCACTCTCAAAACTAATTTCTTCACTGCCAATTCATCCTTCAAAAAGACCATTTATCTATCGCTTAATGCGAATCATGACCCATTCAGGCTTTTTCTCTCAACAAAATGTTACAGGGAATGAGCTAGAAATTGAATATATGTTAACCGATGCATCAATATTACTACTTAAGGACAATCCAATGAGTGTGACACCATTCGTTCAAGCAATGCTCGATCCAATTTTAACAAATCCGTGGCAACAGTTATCTACTTGGTTTAAAAGTGATGATCCTACAACATTTAAAACTGCACATGGGATGTCGATATGGGATTATGCGGCGCATGAGCCCAACTTTAACAACTTATTCAATGATGCAATGGAGAGTGATGCTCGATTGGTCACTAGTGTGGTGATTGAAAAATGCAAGGGAGTGTTCAATGGTTTGGAATCATTGGTTGATGTTGGAGGAGGCACAGGGACCATGGCAAAGGCACTTGCTAAATCATTCCCAAAAATGGAGTGCATTGTATTTGATCTACCACATGTTGTTGATGGCTTTCAAGGAAGTGAGAATCTAAAATATGTTGGTGGAGACATGTTTAAAGAAATTCCTCCAGCAGATGCCATTTTGTTGAAGTGGATATTGCATGACTGGAATGACGAGGAATGTGTGAAAATATTGAAGAAATGCAAGGAATCACTCAAACAGAAAGGCAAAGAAGGAAAGGTGATTATCATAGATATGGTGTTGGAGATTGACCAGAAGGGAGATATTACTAAATCAACTGAAACACAACTCTTCTTTGATATGTTGATGATGGTAGTTGTCACTGGAAAAGAGAGAAACGAAAAAGAATGGAGTAATTTGATTTACTCTGCAGGTTTTGGTGGATATAAGATAACTCCAATTTTAGGTTTAAGGTCTATGATTGAGATCTATCCCTAA 1086 0.3729 MESQYGEHVASSNLLKAQSHVWNHIFNFINSMSLKCVVDLGIPDIIHNYGKPMSLSKLISSLPIHPSKRPFIYRLMRIMTHSGFFSQQNVTGNELEIEYMLTDASILLLKDNPMSVTPFVQAMLDPILTNPWQQLSTWFKSDDPTTFKTAHGMSIWDYAAHEPNFNNLFNDAMESDARLVTSVVIEKCKGVFNGLESLVDVGGGTGTMAKALAKSFPKMECIVFDLPHVVDGFQGSENLKYVGGDMFKEIPPADAILLKWILHDWNDEECVKILKKCKESLKQKGKEGKVIIIDMVLEIDQKGDITKSTETQLFFDMLMMVVVTGKERNEKEWSNLIYSAGFGGYKITPILGLRSMIEIYP* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2824 361 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 22 361 IPR016461 GO:0008168
Tpr4g2824 361 Pfam O-methyltransferase domain 132 342 IPR001077 GO:0008171
Tpr4g2824 361 PANTHER O-METHYLTRANSFERASE 9 361 IPR016461 GO:0008168
Tpr4g2824 361 SUPERFAMILY "Winged helix" DNA-binding domain 12 113 IPR036390 -
Tpr4g2824 361 PANTHER O-METHYLTRANSFERASE 9 361 - -
Tpr4g2824 361 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 359 IPR029063 -
Tpr4g2824 361 Gene3D - 5 108 IPR036388 -
Tpr4g2824 361 Pfam Dimerisation domain 32 79 IPR012967 GO:0046983
Tpr4g2824 361 Gene3D Vaccinia Virus protein VP39 109 361 IPR029063 -
Tpr4g2824 361 CDD AdoMet_MTases 198 286 - -
Tpr4g2824 361 PIRSF O-mtase 1 361 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2824 Tpr-Chr4 31974935 31976560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2824 32 347 Monolignol Biosynthesis Gene Families AT5G54160 35.514 1.53e-58 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2824 - K16040 gmx:100781008 566.614