Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2821 ATGCAGATCTTCGTGAAAACCCTAACCGGTAAAACCATAACCCTAGAGGTTGAATCCTCCGACACCATCGACAACGTCAAAGCCAAAATCCAAGATAAGGAAGGAATTCCACCAGACCAACAGCGTCTCATCTTCGCCGGAAAACAACTCGAAGACGGGCGTACTCTTGCCGATTATAACATCCAAAAAGAATCCACACTCCATCTCGTTCTCCGTCTCCGTGGCGGCATGCAAATCTTCGTCAAAACCCTAACTGGCAAAACCATCACACTCGAAGTCGAATCTTCTGACACAATCGACAACGTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCTGATCAACAACGATTGATCTTTGCAGGAAAGCAATTGGAAGATGGTAGAACTCTTGCTGATTATAATATCCAGAAAGAGTCTACGCTTCATTTGGTTCTTAGGTTACGTGGTGGAATGCAGATTTTTGTGAAGACTTTGACGGGGAAGACGATTACTTTGGAGGTTGAGAGTTCTGATACTATTGATAATGTGAAGGCCAAGATTCAAGATAAGGAAGGTATTCCGCCGGATCAGCAACGATTGATCTTTGCTGGTAAACAGCTTGAAGATGGAAGGACTCTTGCTGATTATAATATTCAGAAAGAATCTACGCTTCACCTTGTTCTCAGGCTCCGTGGTGGTGGCAATGTATAA 696 0.4353 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGNV* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2821 231 PANTHER UBIQUITIN 1 157 - -
Tpr4g2821 231 PANTHER UBIQUITIN 68 230 - -
Tpr4g2821 231 PRINTS Ubiquitin signature 11 31 IPR019956 -
Tpr4g2821 231 PRINTS Ubiquitin signature 32 52 IPR019956 -
Tpr4g2821 231 PRINTS Ubiquitin signature 53 74 IPR019956 -
Tpr4g2821 231 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Tpr4g2821 231 SMART ubq_7 1 72 IPR000626 GO:0005515
Tpr4g2821 231 SMART ubq_7 153 224 IPR000626 GO:0005515
Tpr4g2821 231 SMART ubq_7 77 148 IPR000626 GO:0005515
Tpr4g2821 231 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Tpr4g2821 231 SUPERFAMILY Ubiquitin-like 152 229 IPR029071 -
Tpr4g2821 231 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Tpr4g2821 231 SUPERFAMILY Ubiquitin-like 77 152 IPR029071 -
Tpr4g2821 231 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Tpr4g2821 231 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Tpr4g2821 231 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Tpr4g2821 231 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Tpr4g2821 231 CDD Ubl_ubiquitin 77 152 - -
Tpr4g2821 231 PANTHER - 68 230 - -
Tpr4g2821 231 PANTHER - 1 157 - -
Tpr4g2821 231 CDD Ubl_ubiquitin 1 76 - -
Tpr4g2821 231 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Tpr4g2821 231 CDD Ubl_ubiquitin 153 228 - -
Tpr4g2821 231 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Tpr4g2821 231 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Tpr4g2821 231 Gene3D - 1 76 - -
Tpr4g2821 231 Gene3D - 153 231 - -
Tpr4g2821 231 Gene3D - 77 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2821 Tpr-Chr4 31935493 31936530 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2821 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 1.77e-49 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2821 - K08770 psom:113290303 447.203