LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr4g2816	ATGACATCTTCATCAAGTAGTTTAGAAAACAATAACAATAACAATTTTTTAAACAATTTTACCTTCTCAACACACCCTTTTATGACTACTTCATCTTTCTCTGACCTTTTAGCTTCTACTATAGAAGAGAAATCAAGTGGTGAAAGAAATGGTTATGGTTATGGTGGTGGTGGAAATGGTGGGGGTGTGCCAAAATTTAAGTCTATACCCCCTCCTTCTTTGCCTTTGTCACCTCCACCTGTTTCTCCTTCTTCTTACTTTTCTATTCCTCCTGGTTTGAGTCCTGCTGAGTTACTTGATTCACCTATTATGCTTAACTCTTCCAATATTTTGCCATCTCCTACAACTGGTTCTTTTGCTGGTCAAAGCTACAATTGGATGAACAATTCTGAAGAGAATCAGATTATTCCAAAGGAATCTGACAAAAGCTTCTCAAATTTCTCTTTTCAAACCCAACAAGGACCTGCTGTTACTGGATCCAATACTACTTTAAAATCATCAACAGTTGCAGTTGAACAGCAACCATGGAGTTATCAAGAAATCACAAATCAGAATGGTTTTTCACCTGAAAACAATATGATCCAAACTGAAAACAACTCTTCAATGCAGAGTTTTTCACCTGAAACCAATATGATCCAAGCTGAAAACAACATTTCAATGCAGAGTTTTTCTCCTGAGATTGCTAATGTTCAAACCATCACAAACAACAATGGATTCCAATTAGATCATAACACCAATTACACAATCTTAAGCAGAAGATCAGATGATGGATACAATTGGCGAAAATACGGACAAAAACAAGTTCGAGGAAGTGAAAATCCAAGAAGTTATTACAAATGCACTTACCCTAATTGTCCTACAAAGAAGAAAGTTGAGAGATCAATTGAAGGGCAAATTACTGAGATAGTTTATAAGGGTAATCATAATCATCCTAAACCTCAAGCTGGTTTTAGGAGAAACTCATCATCATCTTCTAATTCTCTTGTTATTGTTCCTGTTAATCCAAATGGTAATGAAATCCATGATCATTCATATGGTTCACATGGTAATGGACAAATGGATTCTGTTGCTACTCCTGAGAATTCATCGATATCAATCGGAGGAGATGATGATTTCGAGCAGAGTTCTCTTCAGAGGGCTAGATCTGTTGGTGCTGATGAATTTGTTGAAGAGGAACCTGAACCTAAAAGATGGAGAAATGAAAGTGAAAATCAGGGTATAGTCCTTGGACACAGGACAGTGAGAGAACCTAGAGTTGTTGTTCAGACAACAAGTGACATTGATATCCTTGATGATGGTTACAAATGGAGGAAATATGGACAGAAAGTTGTCAAGGGAAATCCAAATCCTAGGAGTTACTACAAATGTACATACCAAGGTTGTCCTGTAAGGAAACATGTTGAACGTGCATCACATGATATAAAAGCAGTGATCACAACTTATGAGGGAAAACACACCCATGATGTTCCTGCAGCTCGTGGAAGCGGAAGCAATTCTATGAACAGACCAACTCCAAGCAACCCTTTACATCAATCCAATGTTCCCTATTCCATAAGGCCTTTACAGATGCAATTGCCACAAGGGCAAGTACGTCCTTTCCACCCTGACTTGCTTCTTGGTCAAGGAAACTATGGTATCTCAGGATTTGGGAATCAAATGATGCCTTACATGAATCATCAGCAGCAGCAACAGCAGCAACACATGACTGAAAATGGTTTTTCCTCTAGAGCTAATGATGAACCTAAAGATTTCCTTGCATCTTTGTTGTGCTGA	1773	0.3807	MTSSSSSLENNNNNNFLNNFTFSTHPFMTTSSFSDLLASTIEEKSSGERNGYGYGGGGNGGGVPKFKSIPPPSLPLSPPPVSPSSYFSIPPGLSPAELLDSPIMLNSSNILPSPTTGSFAGQSYNWMNNSEENQIIPKESDKSFSNFSFQTQQGPAVTGSNTTLKSSTVAVEQQPWSYQEITNQNGFSPENNMIQTENNSSMQSFSPETNMIQAENNISMQSFSPEIANVQTITNNNGFQLDHNTNYTILSRRSDDGYNWRKYGQKQVRGSENPRSYYKCTYPNCPTKKKVERSIEGQITEIVYKGNHNHPKPQAGFRRNSSSSSNSLVIVPVNPNGNEIHDHSYGSHGNGQMDSVATPENSSISIGGDDDFEQSSLQRARSVGADEFVEEEPEPKRWRNESENQGIVLGHRTVREPRVVVQTTSDIDILDDGYKWRKYGQKVVKGNPNPRSYYKCTYQGCPVRKHVERASHDIKAVITTYEGKHTHDVPAARGSGSNSMNRPTPSNPLHQSNVPYSIRPLQMQLPQGQVRPFHPDLLLGQGNYGISGFGNQMMPYMNHQQQQQQQHMTENGFSSRANDEPKDFLASLLC*	591

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr4g2816	590	SUPERFAMILY	WRKY DNA-binding domain	422	490	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Tpr4g2816	590	SUPERFAMILY	WRKY DNA-binding domain	252	313	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Tpr4g2816	590	MobiDBLite	consensus disorder prediction	485	508	-	-
	Tpr4g2816	590	Gene3D	WRKY domain	417	483	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Tpr4g2816	590	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	45	523	IPR044810	GO:0003700
	Tpr4g2816	590	ProSiteProfiles	WRKY domain profile.	255	313	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Tpr4g2816	590	ProSiteProfiles	WRKY domain profile.	425	490	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Tpr4g2816	590	Pfam	WRKY DNA -binding domain	255	311	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Tpr4g2816	590	Pfam	WRKY DNA -binding domain	431	488	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Tpr4g2816	590	MobiDBLite	consensus disorder prediction	492	508	-	-
	Tpr4g2816	590	MobiDBLite	consensus disorder prediction	560	580	-	-
	Tpr4g2816	590	MobiDBLite	consensus disorder prediction	560	575	-	-
	Tpr4g2816	590	Gene3D	WRKY domain	242	314	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Tpr4g2816	590	PANTHER	WRKY TRANSCRIPTION FACTOR WRKY24-LIKE	45	523	-	-
	Tpr4g2816	590	SMART	WRKY_cls	254	312	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Tpr4g2816	590	SMART	WRKY_cls	430	489	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr4g2816	Tpr-Chr4	31737032	31741114	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr4g2816	252	523	WRKY Transcription Factor Family	AT2G38470	61.733	1.19e-100	313

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Tpr4g2816		WRKY	6.4e-25	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr4g2816	K13424		-	gmx:100127385	660.218

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr4g2816	4	31737032	31741114	Tpr4g2816	4	31737032	31741114	ECH
	Tpr3g3654	3	40635240	40640614	Tpr4g2816	4	31737032	31741114	PCT