Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2778 ATGGCAACAGAAGCAAGAGCAAAATTCCAAAACCCAGATTTCCGACCCGATTTCCAAACCCTAACGCCGTCAACTCACGACGGTCTTCACTTCTGGCAGTTCATGATTGCCGGATCCATCGCCGGTTGCATAGAGCACATGGCAATGTTTCCGGTTGACACCGTTAAAACTCACATGCAAGCAATCACATCCTGTCCAATTCGATCCGTTTCAGTTCGTCAAGCTTTGCGTTCAATTCTTCAATCGGAAGGTCCGTCGGCGTTATACCGTGGTATCGGTGCAATGGGCCTTGGCGCGGGTCCGGCACACGCCGTTTATTTTTCAGTTTATGAGACTTGTAAAAAAAAGTTCTCACAAGGGAACCCTAATAATGCTGTTGCTCATGCTGCTTCTGGTGTTTGTGCCACGATTTCGAGCGACGCTGTTTTTACGCCGATGGATATGGTGAAACAGAGATTGCAGTTGAGTAATAGTGGTTATAAAGGTGTTTTTGATTGTGTTAAGAGGGTTATGAGTGAGGAAGGGTTTGGTGCTTTTTATGCTAGTTATAGGACTACTGTTTTGATGAATGCGCCTTTTACGGCTGTGCATTTCGCGACTTATGAGGCAGCGAAACAGGCATTGAATGAGGTTTCACCGGAGAGTGTTGATGATGAACGGTTGATTATTCATGCTACGGCTGGTGCTGCGGCGGGTGGTTTGGCTGCTGCTGTTACAACACCACTTGATGTTGTTAAAACTCAATTGCAGTGTCAGGGTGTATGTGGGTGTGATAGGTTCAAAAGTGGTTCAATTGGTGATGTTATTAAAACAATAGTGAAAAAGGATGGTTACAAAGGGCTCATGCGAGGATGGGTTCCAAGGATGCTCTTTCATGCTCCTGCGGCCGCTATTTGCTGGTCTACATATGAAGCTGGAAAGTCCTTTTTCCAAGATTACAATGAGCAGAAAGATACCGGAACCATCACCTAA 972 0.4578 MATEARAKFQNPDFRPDFQTLTPSTHDGLHFWQFMIAGSIAGCIEHMAMFPVDTVKTHMQAITSCPIRSVSVRQALRSILQSEGPSALYRGIGAMGLGAGPAHAVYFSVYETCKKKFSQGNPNNAVAHAASGVCATISSDAVFTPMDMVKQRLQLSNSGYKGVFDCVKRVMSEEGFGAFYASYRTTVLMNAPFTAVHFATYEAAKQALNEVSPESVDDERLIIHATAGAAAGGLAAAVTTPLDVVKTQLQCQGVCGCDRFKSGSIGDVIKTIVKKDGYKGLMRGWVPRMLFHAPAAAICWSTYEAGKSFFQDYNEQKDTGTIT* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2778 323 Gene3D Mitochondrial carrier domain 159 323 IPR023395 -
Tpr4g2778 323 PRINTS Mitochondrial carrier protein signature 34 47 IPR002067 GO:0055085
Tpr4g2778 323 PRINTS Mitochondrial carrier protein signature 47 61 IPR002067 GO:0055085
Tpr4g2778 323 PRINTS Mitochondrial carrier protein signature 138 156 IPR002067 GO:0055085
Tpr4g2778 323 PRINTS Mitochondrial carrier protein signature 180 198 IPR002067 GO:0055085
Tpr4g2778 323 PRINTS Mitochondrial carrier protein signature 228 250 IPR002067 GO:0055085
Tpr4g2778 323 Gene3D Mitochondrial carrier domain 8 158 IPR023395 -
Tpr4g2778 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 219 309 IPR018108 -
Tpr4g2778 323 SUPERFAMILY Mitochondrial carrier 27 304 IPR023395 -
Tpr4g2778 323 Pfam Mitochondrial carrier protein 29 119 IPR018108 -
Tpr4g2778 323 Pfam Mitochondrial carrier protein 221 313 IPR018108 -
Tpr4g2778 323 Pfam Mitochondrial carrier protein 124 210 IPR018108 -
Tpr4g2778 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 207 IPR018108 -
Tpr4g2778 323 PANTHER MITOCHONDRIAL CARRIER PROTEIN, EXPRESSED 1 318 - -
Tpr4g2778 323 PANTHER MITOFERRIN-1-RELATED 1 318 - -
Tpr4g2778 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 29 116 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2778 Tpr-Chr4 31162924 31168133 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2778 1 319 Chloroplast and Mitochondria Gene Families AT1G07030 74.312 1.87e-170 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2778 K15113 - gmx:100802640 588.571