Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2736 ATGCTTAGCCAACCCAACTCAGTAAACTCGTCCACCAACCCACTGAGCCAACTCGTTCAGAACATGTTCTCCGACAACAACAGCAGCAGCAGCAACAACAACAGCATCATCATGCTAGCAGCAATCATTTCTCTGCTCCTAGTAATCCTCTTTGTCCTCCTTCTCCACATCTATGCCAAATGGTTCCTATCTCAGTCCAACTCAGAGACAAATACTCCCCGCCGGCAAGCTCCGGTGAACATCTCCGACGTTCCAGTTACTTCCAACTTCCAACACCATATCAACATTGAAAGATTCGAAAGACAACCCAAAGGACTTGACTCAACAATAGTTTCGACAATTCCAATGTTTGTGTCAGAAGAAAAAACAGAGGAATTAGAATGTGTGATTTGTTTGAGTTATATTGAAAAGGGTGAGATTGGAAGAAAGTTACCAAAATGTGGACATGTTTTTCATGTTGAATGCATTGATATGTGGTTGAATTCACATTGTAATTGTCCAATTTGTAGAGGTTTGATTGTTGAGAATGATTCTCATGTTGTTGAGATTGTGATTGAAAGTTCAAGTGGTTCTGTTTCTGTTTCAGAAAGTTCTTCTTTGTCTTTGTTTGGTTTCTCTTTGAAGAGAATTCTTAGCAAAGTTTTTCTTTCTTCTCATGTAAATGAATTAGATGATGGTTCATAA 684 0.3904 MLSQPNSVNSSTNPLSQLVQNMFSDNNSSSSNNNSIIMLAAIISLLLVILFVLLLHIYAKWFLSQSNSETNTPRRQAPVNISDVPVTSNFQHHINIERFERQPKGLDSTIVSTIPMFVSEEKTEELECVICLSYIEKGEIGRKLPKCGHVFHVECIDMWLNSHCNCPICRGLIVENDSHVVEIVIESSSGSVSVSESSSLSLFGFSLKRILSKVFLSSHVNELDDGS* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2736 227 CDD RING-H2_EL5_like 127 170 - -
Tpr4g2736 227 SMART ring_2 128 169 IPR001841 -
Tpr4g2736 227 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 10 178 - -
Tpr4g2736 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 174 IPR013083 -
Tpr4g2736 227 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Tpr4g2736 227 Pfam Ring finger domain 127 170 IPR001841 -
Tpr4g2736 227 PANTHER RING FINGER DOMAIN-CONTAINING 10 178 - -
Tpr4g2736 227 SUPERFAMILY RING/U-box 118 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2736 Tpr-Chr4 30553437 30554493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2736 25 201 Rapid Response to Elicitors AT3G16720 34.715 1.34e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2736 - - cam:101493591 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2736 4 30553437 30554493 Tpr4g2736 4 30553437 30554493 ECH
Tpr3g3715 3 41463652 41464662 Tpr4g2736 4 30553437 30554493 PCT