Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2730 ATGACTTGTTCCGTCGCAGTTTCGAATTCACCGGTGTTTTCACCATCATCATCTCTTTTCTGCAACAAATCTTCAATCAAATCTTCTTCTTCATCTTCTGAAACACTAACGTTATCTTTATCTCATCTTAAACCTATTAACTCTTCTTCAAATTCTTCTTGTTCTTCTCCTTCTCCTTGTTCTTCACCTTCTTCACCTTTTTGTCTTCGATTACCGAAACTACCCTCGGTTTTTTCATCCAATAATAACAATAACTCTGCGTCTTCAAATGATGCTGTTTTGAAGAGGAAACGACCGACAAGGCTTGATATACCTGTTTGTTCTTCTCTTACTTTTGGTGTTCCGGCGAATCCGTCTGCGGTGGCGCGTGATGTTGTTGAAGCTGGGGGAGATGGGTATTCTGTTTATTGTAAGAGAGGGAGGAGAGAGTATATGGAAGATCGTTTTACTGCTGGAGATAATCTTCGCGGTGAAAATAATTTGGCTTTTTTTGGCGTATTTGATGGCCATGGAGGTGCCAAAGCTGCTGAATTTGCGGCAAATAACTTAGAAAAGAACATCTTGGATGAGGTGATCATGAGTGATGAAGAAGATGTTGAGGAGGCTGTGAAGCGCGGTTACCTCAATACCGATTCTGAGTTCATGAAAAAAGATCTTCATGGTGGAGCTTGTTCTGTAACAGCATTGATTAGGAATGGTAACTTAATTGTATCTAACGCCGGTGATTGCCGTGCTGTAATTAGTAAAGGAGGGGTTGCAGAGGCCCTAACATCTGATCACCGACCTTCGAGGGAAGACGAAAGGGATAGAATTGAAACACTGGTAAATTTTCTGACCATTGCAGTGGTTTCTCTTTTTATATGCGGTTTATTGAAAGTGAAACCAATGTTTGAGTTTGGTTTTGTTGGTTCTTATTCTTATGTATTGAAATGGGTTTTGCAGGGTGGTTATGTTGATTTATGTCGCGGTGTTTGGAGGATTCAAGGATCTCTTGCTGTATCTAGAAGTATCGGAGATCGACACCTGAAACAATGGGTGACAGCTGAGCCTGAGACTAAAGTTATTAGAATTGAACCTGAACATGACTTGTTAATATTAGCTTCAGATGGATTATGGGATAAGGTTAGTAACCAGGAAGCAGTAGACACTGCTCTTCAATTCTGCGTAGGAAACAACAAACAACAAGCATTGTTAGCCTGTAAAAAGCTTGCAGAGTTGGCTGTTTCGCGCGGCTCATTGGATGACACAAGTGTTATGCTGATCAAATTGAAACAATATATTTAA 1284 0.4042 MTCSVAVSNSPVFSPSSSLFCNKSSIKSSSSSSETLTLSLSHLKPINSSSNSSCSSPSPCSSPSSPFCLRLPKLPSVFSSNNNNNSASSNDAVLKRKRPTRLDIPVCSSLTFGVPANPSAVARDVVEAGGDGYSVYCKRGRREYMEDRFTAGDNLRGENNLAFFGVFDGHGGAKAAEFAANNLEKNILDEVIMSDEEDVEEAVKRGYLNTDSEFMKKDLHGGACSVTALIRNGNLIVSNAGDCRAVISKGGVAEALTSDHRPSREDERDRIETLVNFLTIAVVSLFICGLLKVKPMFEFGFVGSYSYVLKWVLQGGYVDLCRGVWRIQGSLAVSRSIGDRHLKQWVTAEPETKVIRIEPEHDLLILASDGLWDKVSNQEAVDTALQFCVGNNKQQALLACKKLAELAVSRGSLDDTSVMLIKLKQYI* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2730 427 CDD PP2Cc 132 423 IPR001932 -
Tpr4g2730 427 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 314 426 - -
Tpr4g2730 427 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 3 293 - -
Tpr4g2730 427 SMART PP2C_4 122 421 IPR001932 -
Tpr4g2730 427 PANTHER PROTEIN PHOSPHATASE 2C 3 293 IPR015655 GO:0004722|GO:0006470
Tpr4g2730 427 PANTHER PROTEIN PHOSPHATASE 2C 314 426 IPR015655 GO:0004722|GO:0006470
Tpr4g2730 427 Pfam Protein phosphatase 2C 315 415 IPR001932 -
Tpr4g2730 427 Pfam Protein phosphatase 2C 133 274 IPR001932 -
Tpr4g2730 427 ProSiteProfiles PPM-type phosphatase domain profile. 132 423 IPR001932 -
Tpr4g2730 427 ProSitePatterns PPM-type phosphatase domain signature. 163 171 IPR000222 GO:0043169
Tpr4g2730 427 Gene3D - 124 427 IPR036457 -
Tpr4g2730 427 SUPERFAMILY PP2C-like 132 424 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2730 Tpr-Chr4 30418657 30421903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2730 1 427 PP2C-type Phosphatase Gene Family AT2G30020 56.236 1.11e-149 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2730 K17506 - gmx:100797934 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2730 4 30418657 30421903 Tpr4g2730 4 30418657 30421903 ECH
Tpr3g3721 3 41515026 41517097 Tpr4g2730 4 30418657 30421903 PCT