Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2729 ATGGAGACAAGCATATTGGGGTTAGCTTCATTCCCTTGCTACACAACACCAAACAGTTCTCGTCTAAACCTCAGAATATCATTGTCTATGCGACATGAATATCCACTTGCAAGCAAAATCGTTGTTAGAAATTTACCTTATTTTACCCGCGAGACCGCTCTGCAAAAGGAATTTTCAAATTTTGGCAAAATAGCTGAAGTTCAAATGGTTAAAGATGCGATCACGAAAAGATCAAAGGGACTTGCTTTTATTCAATACACATGTCAAGACGATGCCATGCTTGCACTAGAAAACATGGATCAAAAGAATTTTTACGGCCGGATGATTTTTGTAGAACTCGCAAAACCTGGTTGGGATAATATTGGTATACCTCCAAGACCTCCAAGGGCCTCTGGGCCGCCAAAGAAGTGGAATTTACCCGAAGAACAAGGAGAAGAGGTAGATTGTTGGTACTGA 456 0.4079 METSILGLASFPCYTTPNSSRLNLRISLSMRHEYPLASKIVVRNLPYFTRETALQKEFSNFGKIAEVQMVKDAITKRSKGLAFIQYTCQDDAMLALENMDQKNFYGRMIFVELAKPGWDNIGIPPRPPRASGPPKKWNLPEEQGEEVDCWY* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2729 151 Gene3D - 27 145 IPR012677 -
Tpr4g2729 151 MobiDBLite consensus disorder prediction 124 151 - -
Tpr4g2729 151 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 23 145 - -
Tpr4g2729 151 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Tpr4g2729 151 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 108 IPR000504 GO:0003723
Tpr4g2729 151 SMART rrm1_1 39 112 IPR000504 GO:0003723
Tpr4g2729 151 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1 23 145 - -
Tpr4g2729 151 SUPERFAMILY RNA-binding domain, RBD 38 132 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2729 40 117 C2H2 Transcription Factor Family AT2G19380 33.750 2.24e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2729 - - gmx:100305971 198.749