Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2721 ATGGAGGTTGATGGTGGTGATAAGAATAATGGAAATCGAAAACGGAAAAGAGGGTCGTTGAAAAAAAAGCTTCTTGTTGATGAAAAAGTTGAGTTGAGGAGTTTAGAGGATGGTTTTCTAGGATCATGGCATCCGGGGAAAATTGTTCGCTGTGGGAGGAAGAAGCGATATGTGAAATATGACAATATTCTCAATGATGATGAATCAGACTATCTTATTGAAGTGGTGAACGTTTCTAGTGTTTTTGATGGTGTTAATCCTTTATCTGGTTCAAATTGTGTCTATGAACGCGGTCTAATTAGACCATTGCCTCCTCCAATTGAGTTACGGATAAAGGATCTTCCATTTGGACTTTGTGTTGATGTGAATTATCAAGATGCTTGGTGGGAAGGTGTGATATTCGATCACTGTGATGGAACGAAGGAGAGGAGCATATTCTTCCCTGATTTGGGTGATGAAATGAAGGTTGGAGTTAAACAATTGAGGATCACTCAGGATTGGGATGAATCAACTGAGAATTGGTTACCGAGAGGGAAATGGGTTTTTCTTGAGTTGTTTGAGGAGTGTGAGAGGGTATCCTATGTTGCAGTCTCGGTGAAACAGATTTGGTATGATGTTAGGATGAGAAAAGATTTTGCTGAAACCATTAAAGAATGGACTTGTAATGTGAAGGAGTTGTGGAGAGAAATGGTTGTTGAGGTGATTGGTGATTACTATACCCTCACTCTAAACGAAGTTCGCCTTGCATTAAACCTTCCGAAGAATTTACTCGAAGGAGGGTCATCTGAACCATCTGATAATGTTCATTGTTATGCTGCTAGTCATGGTAATGAAATTGGTTCTGACATTGAAATAGCTAATAGGCCCAAGGAAAATGGTGACTCCCCAAACATGTTGGATGTTGATCAAAACTGTGGTAGCACTAGCCCCATTCCTTTGGTGGATGGGGAAGTTGAGAAGGAAAGTGTTTTACATGAAGAGTCCGAATCACCAAAAGAAATTTCCTGTGCTAATGTATTAGATTCAGATAAAAACCGAAGACGCAGACGCTCTACGTCAATAAATTGGAGACCTTTGGTATTGTCTGAAGTTGAATTCTGTCCTGAAGTTATTAATGAGTATGCAGTTGGATGCAGGAGCAAGACGGTTCGAGAACTTTTGAAGACGAAAGTTAGAAAACATCTTGCTTATCTTGGATGGACAATTGAATGGACCGAAAACAATTGTCCTCAAAATAGACGGTACCGGTACAAGTCACCGGATATACGTGACCCGAAGTTTTACACTTCAATTTTTCAGGTTACTAAAGTTTTGGAAGATGGTTCCAGCATGAACTTTGTGCCACCCCAAATTGACAGTAATATTTCACATCTGCTAACTGATTCGCAACAAATGAACCGAGATTTAGATGTTTGTCCTCCAACTAAGGATCCTTCTACAGTTAATATTCAATCTGAGCCTGAATTATGTCCTCTAGCCATCGTGAAATACTACTTTCACTCATTAGAGAGAAACTCGGCTGATAAGAGAAAATGGAAGTTGAAAGCGAAAAAACATCTGTTAGCAGAAGGATGGATCTTTGACTACCCAACTGAAAGAAGGAAGACAACTTTGTACAAGTCTCCACAAAATCAGTGTTTAGGTACACTTCAAGGTGCATGCAGACTATACCTTAAAGAAAAAATTCCTGAATGGACTAATTCTGATCAAGTTAATGGTGATGATCTATTGCCGAGTGTGTTCCAATTGCTTCAAAAAGAGCCTGAATTACATACTATAGATGGTACACCACCAACTGCAAAGAGAAACCATAAACGCACAAGGACTTCAAAGGGTAGCGCACAAAAGGGCATAGAGAATGAAGTACCTACCCGGGTGCTAAGATCAAGCAAGAGGGTGCAGAAGGTTTTGGGTTTGTCACATCAAAAGCCTCAAAATGTTCTGTCTTGGTTAATAGATTACAACATTGTGTTACCAAAATACAAGGTCTTTTACCGGGAAACAGAAGGAGAAGGAAACTCCCCCATGGTTGAGGGAAGGATAACTCGTGAAGGAATCAAATGCAGCTGTTGTCAGAACATATATGGACTCAGTGGCTTTGCAAACCATGCCGGTGGAAGCAGTACCTGCTGGCCTTCGGCTTGTATCTTTTTGAAGGATGGTAGGTCATTGTTAGATTGCATGAGGGAAGTAATGCAAGATCACAGGGCAAGGGAAGTCATGGAGAAACCGTGCAATTATATGTTTGAAGGCGAAAATGACAACATTTGTTCTGTTTGTAATTACGGCGGTGAACTTATTTTATGCGACCAATGCCCCTCAGCATTTCATAAGAATTGTCTGAATTTGGAGGACATCCCTGATGGTGATTGGTTTTGTCCATCATGCCGTTGCGGGATTTGCGGCCAAAACAAAATTGAAAAGACTGAGGATGGACATTTTCTCACTTGCATTCAGTGTGAACATAAATATCATGTTCAGTGCCTCAGAAATAAAGAAAAAGATAATTCAAGACGATACCAGGAAAATTGGTTTTGTGGAGAAGAGTGTGAAAGGGTATATAAGGGGCTCCAAAATCTGTTGGGAAAGCCGGTTCTAGTGGGTGAGGACAATCTAACTTGGACATTGGTGAAGTATGTCAACTCTGAGAATAGTGGTGTTGGCAGTGCTGAAAATGACTTAGTAGCAGAGAGTTACACTAAACTCAGTGTTGCACTTTCGGTGATGCATGAATGTTTTGAGCCGTTACATAACTCGTTCTCTAGGAGGGATATCGTGGAAGATGTTATATTCAACCAAAGGTCTGAGCTCAACCGGTTGAATTTCCAGGGTTTCTATACCGTACTTCTAGAGAGAAATGAAGAGTTGATTAGTGTGGCAACTATTAGGATATTTGGAGAGAAGGTAGCAGAAGTACCCCTTGTCGGTACAAGATTCCAGTATCGCCGACTTGGAATGTGTCGTGTTTTAATGGATGAGCTTGAAAAGAAACTAAAGCAACTTGGAGTGGAGAGACTGGTTCTACCTGCTGTTCCTGGTGTGCTAGAAACTTGGACCAGTTCTTTTGGTTTTAAGCAGATGACAAACTTCGAGCGATCGCAGTTTTTGGACTACTCGTTCCTAGATTTCCAAGGAACAGTGATGTGTCAGAAACTGTTGTCAAGACACCCATCTCCTGATTCAGATGTGACTAGAGACGCAACAACGCCAAAACAAGATGGAAGCTTTTCTGTAAAATGTAAAATTAATTTTGAAACGGCTAGTCCAGTCGCTGAAGTGGATCAAATGGAAGGGATTGGCGAAAGTGGGATAATGGACTTACAAGTTTGGAGACCAAACCCTAATTCTTAG 3351 0.4079 MEVDGGDKNNGNRKRKRGSLKKKLLVDEKVELRSLEDGFLGSWHPGKIVRCGRKKRYVKYDNILNDDESDYLIEVVNVSSVFDGVNPLSGSNCVYERGLIRPLPPPIELRIKDLPFGLCVDVNYQDAWWEGVIFDHCDGTKERSIFFPDLGDEMKVGVKQLRITQDWDESTENWLPRGKWVFLELFEECERVSYVAVSVKQIWYDVRMRKDFAETIKEWTCNVKELWREMVVEVIGDYYTLTLNEVRLALNLPKNLLEGGSSEPSDNVHCYAASHGNEIGSDIEIANRPKENGDSPNMLDVDQNCGSTSPIPLVDGEVEKESVLHEESESPKEISCANVLDSDKNRRRRRSTSINWRPLVLSEVEFCPEVINEYAVGCRSKTVRELLKTKVRKHLAYLGWTIEWTENNCPQNRRYRYKSPDIRDPKFYTSIFQVTKVLEDGSSMNFVPPQIDSNISHLLTDSQQMNRDLDVCPPTKDPSTVNIQSEPELCPLAIVKYYFHSLERNSADKRKWKLKAKKHLLAEGWIFDYPTERRKTTLYKSPQNQCLGTLQGACRLYLKEKIPEWTNSDQVNGDDLLPSVFQLLQKEPELHTIDGTPPTAKRNHKRTRTSKGSAQKGIENEVPTRVLRSSKRVQKVLGLSHQKPQNVLSWLIDYNIVLPKYKVFYRETEGEGNSPMVEGRITREGIKCSCCQNIYGLSGFANHAGGSSTCWPSACIFLKDGRSLLDCMREVMQDHRAREVMEKPCNYMFEGENDNICSVCNYGGELILCDQCPSAFHKNCLNLEDIPDGDWFCPSCRCGICGQNKIEKTEDGHFLTCIQCEHKYHVQCLRNKEKDNSRRYQENWFCGEECERVYKGLQNLLGKPVLVGEDNLTWTLVKYVNSENSGVGSAENDLVAESYTKLSVALSVMHECFEPLHNSFSRRDIVEDVIFNQRSELNRLNFQGFYTVLLERNEELISVATIRIFGEKVAEVPLVGTRFQYRRLGMCRVLMDELEKKLKQLGVERLVLPAVPGVLETWTSSFGFKQMTNFERSQFLDYSFLDFQGTVMCQKLLSRHPSPDSDVTRDATTPKQDGSFSVKCKINFETASPVAEVDQMEGIGESGIMDLQVWRPNPNS* 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2721 1116 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 1 1111 - -
Tpr4g2721 1116 PANTHER PHD ZINC FINGER PROTEIN 1 1111 - -
Tpr4g2721 1116 SUPERFAMILY FYVE/PHD zinc finger 736 797 IPR011011 -
Tpr4g2721 1116 Pfam PHD-finger 756 798 IPR019787 -
Tpr4g2721 1116 Pfam Tify domain binding domain 679 730 IPR032308 -
Tpr4g2721 1116 SMART PHD_3 798 850 IPR001965 -
Tpr4g2721 1116 SMART PHD_3 756 797 IPR001965 -
Tpr4g2721 1116 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 892 1053 IPR000182 GO:0016407
Tpr4g2721 1116 Pfam Agenet domain 28 105 IPR008395 -
Tpr4g2721 1116 CDD PHD2_CHD_II 757 796 - -
Tpr4g2721 1116 MobiDBLite consensus disorder prediction 594 621 - -
Tpr4g2721 1116 Pfam Acetyltransferase (GNAT) family 938 1024 IPR000182 GO:0016407
Tpr4g2721 1116 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 939 1037 IPR016181 -
Tpr4g2721 1116 SMART agenet_At_2 22 90 IPR014002 -
Tpr4g2721 1116 SMART agenet_At_2 112 169 IPR014002 -
Tpr4g2721 1116 SMART ring_2 798 853 IPR001841 -
Tpr4g2721 1116 SMART ring_2 757 796 IPR001841 -
Tpr4g2721 1116 Gene3D - 905 1050 - -
Tpr4g2721 1116 ProSiteProfiles Zinc finger PHD-type profile. 754 799 IPR019787 -
Tpr4g2721 1116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 748 798 IPR013083 -
Tpr4g2721 1116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 799 853 IPR013083 -
Tpr4g2721 1116 CDD NAT_SF 948 1008 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2721 Tpr-Chr4 30217249 30223463 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2721 33 1001 PHD Transcription Factor Family AT5G58610 36.937 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr4g2721 Acetyltransf_1 0.00023 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2721 - - gmx:102661511 1340.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2721 4 30217249 30223463 Tpr4g2721 4 30217249 30223463 ECH
Tpr3g3724 3 41570374 41576993 Tpr4g2721 4 30217249 30223463 PCT