Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2709 ATGTGCAGGAAAACTTGTCAAACTAGTTTGATCATGGGGTATGAGAATGGTAATAAAGAAGGGAAGCATCATGAGATTTCTTCTTTGCTTGAATTTTCAGCTGAAGATGATGTGATTGGTTTCAAAGATGCCGTTGAAAACGAGGGTTGTGACGTTAATGAGGTTGGTTTATGGTATGGAAGGAGCGTTTGTTCGAAAAAATTAGGTTATGAAGAGAGGACTCCTCTTATGGTTGCTGCTATGTTTGGAAGTTTGGATGTATCCGCTTATATTCTTGGAACAGGCCGTGTTGATGTTAATCGGTCTTGTGGATCCGATGGTGCTACTGCTCTTCATTGTGCTGTTGCTGGTGGTTCTGCTGCTTCCGCAGAGATTATCAAGCTTTTGCTTGATGCATCTGCGGATCCTAGTGTTGTTGATGCCAACGGTAACCGACCAGTTGACTTGATTGTTTCTGGGGTCAATTCTATCTTCAATCCGAGGAAGAGGATGCTGCAGGCTCTTTTGGAGGGTACGGTTGGTGTTGCTGATCAGACATCTCTTGCATTTCCGGAGACAATTGACGTTGTTGATGAATATCAAAGGCAAGATATAAACACACCTCGTGTTTCAAAAGATTATCCTGTTGATCTCTCTCTTCCAGATATAAAGAATGAGTTATATAGTACCGATGAATTTAGGATGTATACATTCAAAGTTAAGCCTTGTTCAAGGGCGTATTCTCATGATTGGACCGAGTGTCCCTTTGTTCATCCAGGTGAAAATGCAAGGCGACGTGATCCGAGGAAATATCATTATAGCTGCGTCCCTTGTCCTGAGTTTCGCAAAGGTTCGTGTAGCAAAGGAGATTCATGTGACTATGCACATGGGATTTTTGAGTGCTGGCTTCATCCTGCGCAGTATCGTACACGTCTTTGCAAGGATGAGAGTGAATGCACAAGAAGAGTTTGCTTCTTTGCTCATAGGATTGAGGAGCTTCGCCCCTTGTATGCTTCTACCGGTTCTGCTATTCCGTCTCCTAGGTCATATTACAGTACCGCTTCTACATTGGAAATGGGTTCACTTAGCCCAATGTCACATGGTTCTCCATCGGTTTTGATACCGCCATCCTCAACGCCGCCTCTGACTCCATCTGGAGCTTCATCTCCCGTTGCTGCTACAGCCATGTGGCAGACACAGTTTAATGTTTCGGTCCCTAGCCTACAGCTTCCCAAAAGCAGGTTGAAGACTGGAATGACCGCTAGAGATATTGATTCCGATATTGCAATGCTTAGGAAGCAACTAATGATGGATGAGATATCCGGTCTTCCTTCACCATCCAACTGGAAAAATTCGATGCCTAACAGTCCATCTTTTTCGGTTTCTTTGAGTGATGGCCATACTACCAGAGAACTAAATAGGTTTTCGGGGGTGAAGCCTACTAACCTTGAAGACATTTACGGATCTCTTGATCCATCAATGTTGCACAAATTCCACGGAATCTCACTTGATGCTGCAGGATCGCAGTTACAATCTCCAACTGGAATCCAGATGCGTCCCAATATGAATCAGCAGCTACAAAACTATTCTTCAGGCTATTCCACTTCGAGTAGGACTGGATCGCCACCCTATGGGTTTGATCCATCCGGGGAGTTATCCGCAGCGGCTTTAAATTCAAGAGCTGCTGCCTTTTCTAAGCGGAGCCAGAGCTTTATCGAGCGCAATGTGGCAAATCGTCATTCTGAGCATCTTTCTCCTGTGAAGCCTTATGCTTTTCCTAACTGGGGCTCACCCGATGGAAAATTGAATTGGACCGTACAAGGAGAAGAACTGAATAAGCTGAGGAAATCGTCTTCTTTTGGATTTCTAAGCAGTAATACTCCTTTAAATCCAGCTGCAACTAGAGCACAAGAAAATGACGACGAACCAGATGTATCTTGGGTTAATTCACTTGTGAAGGACGCTACACCGCAGGAATCTGGTCGGTTTAGTACTGAAGATCAGAAAAGGAAACTGCAATACAATCTTAACAATGGAACCGATGCGATTCCAGCGTGGTTAGAGCAATTGTACATTGATCAGGAACAAACTGTGCATTGA 2079 0.4416 MCRKTCQTSLIMGYENGNKEGKHHEISSLLEFSAEDDVIGFKDAVENEGCDVNEVGLWYGRSVCSKKLGYEERTPLMVAAMFGSLDVSAYILGTGRVDVNRSCGSDGATALHCAVAGGSAASAEIIKLLLDASADPSVVDANGNRPVDLIVSGVNSIFNPRKRMLQALLEGTVGVADQTSLAFPETIDVVDEYQRQDINTPRVSKDYPVDLSLPDIKNELYSTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDSCDYAHGIFECWLHPAQYRTRLCKDESECTRRVCFFAHRIEELRPLYASTGSAIPSPRSYYSTASTLEMGSLSPMSHGSPSVLIPPSSTPPLTPSGASSPVAATAMWQTQFNVSVPSLQLPKSRLKTGMTARDIDSDIAMLRKQLMMDEISGLPSPSNWKNSMPNSPSFSVSLSDGHTTRELNRFSGVKPTNLEDIYGSLDPSMLHKFHGISLDAAGSQLQSPTGIQMRPNMNQQLQNYSSGYSTSSRTGSPPYGFDPSGELSAAALNSRAAAFSKRSQSFIERNVANRHSEHLSPVKPYAFPNWGSPDGKLNWTVQGEELNKLRKSSSFGFLSSNTPLNPAATRAQENDDEPDVSWVNSLVKDATPQESGRFSTEDQKRKLQYNLNNGTDAIPAWLEQLYIDQEQTVH* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2709 692 Gene3D - 6 173 IPR036770 -
Tpr4g2709 692 Gene3D - 265 328 - -
Tpr4g2709 692 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 16 689 - -
Tpr4g2709 692 SMART ANK_2a 71 101 IPR002110 GO:0005515
Tpr4g2709 692 SMART ANK_2a 106 138 IPR002110 GO:0005515
Tpr4g2709 692 PANTHER UNKEMPT FAMILY MEMBER 16 689 IPR045234 -
Tpr4g2709 692 ProSiteProfiles Zinc finger C3H1-type profile. 270 292 IPR000571 GO:0046872
Tpr4g2709 692 SUPERFAMILY Ankyrin repeat 44 155 IPR036770 -
Tpr4g2709 692 ProSiteProfiles Ankyrin repeat profile. 106 141 IPR002110 GO:0005515
Tpr4g2709 692 Pfam Ankyrin repeats (3 copies) 50 139 IPR002110 GO:0005515
Tpr4g2709 692 SMART c3hfinal6 300 323 IPR000571 GO:0046872
Tpr4g2709 692 SMART c3hfinal6 265 291 IPR000571 GO:0046872
Tpr4g2709 692 ProSiteProfiles Ankyrin repeat region circular profile. 106 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2709 Tpr-Chr4 30098346 30101542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2709 24 687 C2H2 Transcription Factor Family AT5G12850 39.197 4.19e-152 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr4g2709 Ank_4 1.2e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2709 - - aprc:113846970 1006.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2709 4 30098346 30101542 Tpr4g2709 4 30098346 30101542 ECH
Tpr4g2709 4 30098346 30101542 Tpr3g3734 3 41669000 41671652 ECH