Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2693 ATGTCGCACTTCGGAAGGCAAGGTCCTCCAGACATCGCTGACACCTACTCTCTCCTCGTCCTCAACATCACTTTCCGTACAACCGCCGATGACCTATTTCCTCTCTTTGATAAATACGGCAAAGTTGTTGACATTTTCATCCCCAAAGATCGAAGGACTGGTGAATCGAGGGGTTTCGCTTTTGTGCGTTATAAGTATGCTGATGAAGCTTCAAAGGCTGTTGATAGACTCGATGGAAGAATGGTCGATGGTCGTGAAATAACTGTCCAGTTTGCAAAATATGGCCCTAATGCTGAGAGAATTCACAAAGGAAGGATTATTGAAACATCCCCAAGATCAAAGAGCTCAAGGAGCCGCAGTCCCAGCAGGAGGAGGCATCACGATGATTACAGAGACAAGGATTACAGGAGGAGAAGTCGCAGCAGGAGTTACGATAGGTATGGACGTGATAGGTACCGTGGTGGGCGAGATAGGGACCATCGCCGCCGAAGCAGAAGCCGAAGTGCCAGTCCTGATTACAAGCGCCGTGGAAGGGGGCGCTATGATGATGAGCGTCATAGTAGAAGCCGGAGCAGATCAGTAGACAGCCGCTCCCCTGCACGACGCAGTCCTAGTCCAGCAAGGAGCCCTTCTCCTAAAAAGAGTATTTCTCCCCAAAGGAGTACTTCTCCCAGGAAAAGTCCTCGTCGTGAAAGTCCTGATAATCGTAGCCGTGATGGGAAGTCTCCTACTCCTCGCAGTGTCTCACCTCGAGGTCGCCCTGATGCATCTCGAAGCCCATCTCCTTGA 789 0.507 MSHFGRQGPPDIADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGPNAERIHKGRIIETSPRSKSSRSRSPSRRRHHDDYRDKDYRRRSRSRSYDRYGRDRYRGGRDRDHRRRSRSRSASPDYKRRGRGRYDDERHSRSRSRSVDSRSPARRSPSPARSPSPKKSISPQRSTSPRKSPRRESPDNRSRDGKSPTPRSVSPRGRPDASRSPSP* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2693 262 Gene3D - 4 105 IPR012677 -
Tpr4g2693 262 MobiDBLite consensus disorder prediction 164 197 - -
Tpr4g2693 262 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 262 - -
Tpr4g2693 262 MobiDBLite consensus disorder prediction 198 223 - -
Tpr4g2693 262 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Tpr4g2693 262 SUPERFAMILY RNA-binding domain, RBD 9 101 IPR035979 GO:0003676
Tpr4g2693 262 SMART rrm1_1 17 90 IPR000504 GO:0003723
Tpr4g2693 262 MobiDBLite consensus disorder prediction 122 157 - -
Tpr4g2693 262 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Tpr4g2693 262 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 1 262 - -
Tpr4g2693 262 MobiDBLite consensus disorder prediction 100 262 - -
Tpr4g2693 262 MobiDBLite consensus disorder prediction 224 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2693 Tpr-Chr4 29866784 29870302 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2693 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 34.177 3.58e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2693 K12891 - gmx:100778928 308.916