Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2692 ATGGATCTTAACCAAGGTAATATGAATCAGTGTACTCACTGGTACAAGAGAATTCCAGATGAGTTTATAACAAGATTTGGGAATGAACTTAAGAATGTTGCTACAGTTACTGTTCCAGATGGTTGTGTTTGGGAAATGGAATTGAAGAAATGCGACGAGAATGTTTTCTTTTGCAACAAATGGCAAGAGTTTGTAGAATACTATTCTATAGGATATGGTTGCTATCTGTCTTTCAAATATGAAGGGAATTCAAAGTTTAGTGTTATTATATTTGATGCAACTTCTGTTGAAATTTGCTATCCTTTCAAAACACCAAGTTCAAATGGAGAACCAAAAACAAAGTATCCTAGTCCTAGGAAAAGGTCAAAGGTTGAAACAAGTGAGAGTCCTGGGAAAAAGGTCAAAAGTATGTCTACAGATGCTTCGACAAGAGCAGAGGACGCTGCCAAGGAATTCAACACAAATAATCCTTATTTTTGTTCCAAAATTACTATCAGAAAATATGTGTATGTTCCCTCTGATTTTGCTCAAAAGTATCTGAAGCTAAATGTTCCTATAAAACTCCAAAATTCTCATGGGGAGCAGTGGGAAGTTTTGTGCATAGTGCATGATTCCAGATCATCATCAATGCTAATATCGAAGGGGTTTGCTAAATTTGAAAGTGACAACAACCTATCACATGGAGATTATTGTGTGTTTGAGCTGATCAAGAAGAAGCCTGTTGTGCTAAAAGTCACAATGTTTCGCGCGGTTGACTATTGTGATTAA 768 0.362 MDLNQGNMNQCTHWYKRIPDEFITRFGNELKNVATVTVPDGCVWEMELKKCDENVFFCNKWQEFVEYYSIGYGCYLSFKYEGNSKFSVIIFDATSVEICYPFKTPSSNGEPKTKYPSPRKRSKVETSESPGKKVKSMSTDASTRAEDAAKEFNTNNPYFCSKITIRKYVYVPSDFAQKYLKLNVPIKLQNSHGEQWEVLCIVHDSRSSSMLISKGFAKFESDNNLSHGDYCVFELIKKKPVVLKVTMFRAVDYCD* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2692 255 Pfam B3 DNA binding domain 17 93 IPR003340 GO:0003677
Tpr4g2692 255 Pfam B3 DNA binding domain 168 250 IPR003340 GO:0003677
Tpr4g2692 255 SUPERFAMILY DNA-binding pseudobarrel domain 152 249 IPR015300 -
Tpr4g2692 255 ProSiteProfiles B3 DNA-binding domain profile. 18 94 IPR003340 GO:0003677
Tpr4g2692 255 Gene3D - 5 95 IPR015300 -
Tpr4g2692 255 ProSiteProfiles B3 DNA-binding domain profile. 154 251 IPR003340 GO:0003677
Tpr4g2692 255 SMART B3_2 160 251 IPR003340 GO:0003677
Tpr4g2692 255 SMART B3_2 4 94 IPR003340 GO:0003677
Tpr4g2692 255 PANTHER B3 DOMAIN-CONTAINING 123 250 - -
Tpr4g2692 255 PANTHER B3 DOMAIN-CONTAINING 17 124 - -
Tpr4g2692 255 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 123 250 - -
Tpr4g2692 255 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 17 124 - -
Tpr4g2692 255 Gene3D - 137 254 IPR015300 -
Tpr4g2692 255 SUPERFAMILY DNA-binding pseudobarrel domain 14 93 IPR015300 -
Tpr4g2692 255 MobiDBLite consensus disorder prediction 114 130 - -
Tpr4g2692 255 CDD B3_DNA 17 92 IPR003340 GO:0003677
Tpr4g2692 255 MobiDBLite consensus disorder prediction 109 140 - -
Tpr4g2692 255 CDD B3_DNA 161 249 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2692 Tpr-Chr4 29860721 29863480 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2692 118 255 B3 DNA Binding Superfamily AT3G18990 36.986 1.78e-18 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr4g2692 B3 1.2e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2692 - - mtr:MTR_5g070440 389.808