Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2691 ATGAAGTCTCGCCGGGGAAGGTGTGTCCGACCATCGGCGGTGCTGGAGAAAGAATCGAAACATTTTATGAAAGCCATACTTCCTTCACCCATTCATGCCAAACAAATTAGAATTCCAGACGAATTTATAACAAGATTTGGGAATGAACTCAAGAATGTTGCTACAATCATTGTTCCTGATGGTTGTGTTTGGGAAATGGAACTGAAGAAATGCGACGAACATGTTTTCTTTTGCAACGGATGGCAAGAGTTTGTAGAATACTATTCTATAGGATATGGTTGCTACCTGTCTTTCAAATATAAAGGGAATTCAAAGTTTAGAGTTATTATATTTAATGCAACTTCTGTTGAAATTTGCTATCCTTTGAAAACTCCGAGTACTAATGGAGAACAAAACAAAAAGTATTCTAGTCCTAGGAAAAGGAAGGTTGAAACAAGTGAGAGTCATGGGAAAAAGGTCAAAATAATGTCTAAACATGCTTCTAAAAGAGCAGAGGATGCTGCCAATGTATTCAACCCAAATAATCCATATTTTTGTTCCAAAGTTGCTAAGGGAAGATGTGTGTATGTTCCTTCTGATTTTGCTTTCAAGTATCTGAAGCTAAATGTTCCTATAAAACTCCAAAATTCTCATGGGGAGCAGCAGGAAGTTTTTTGCATATTGCCTGATTCCAGATCATCATATATGCGAATATCGAAAGGATTTTCTAAATTTCAAAGGAACAACAACCTGTCACCTGGAGATTATTGTGTGTTTGAGCTGATCAAGAAGAAGCCGGTTGTGCTAAAAGTGACGATGTTTCGTGCGGTTGACTATTGCGATTAA 825 0.3745 MKSRRGRCVRPSAVLEKESKHFMKAILPSPIHAKQIRIPDEFITRFGNELKNVATIIVPDGCVWEMELKKCDEHVFFCNGWQEFVEYYSIGYGCYLSFKYKGNSKFRVIIFNATSVEICYPLKTPSTNGEQNKKYSSPRKRKVETSESHGKKVKIMSKHASKRAEDAANVFNPNNPYFCSKVAKGRCVYVPSDFAFKYLKLNVPIKLQNSHGEQQEVFCILPDSRSSYMRISKGFSKFQRNNNLSPGDYCVFELIKKKPVVLKVTMFRAVDYCD* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2691 274 CDD B3_DNA 180 268 IPR003340 GO:0003677
Tpr4g2691 274 MobiDBLite consensus disorder prediction 129 148 - -
Tpr4g2691 274 Pfam B3 DNA binding domain 22 112 IPR003340 GO:0003677
Tpr4g2691 274 Pfam B3 DNA binding domain 180 269 IPR003340 GO:0003677
Tpr4g2691 274 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Tpr4g2691 274 SMART B3_2 22 114 IPR003340 GO:0003677
Tpr4g2691 274 SMART B3_2 178 270 IPR003340 GO:0003677
Tpr4g2691 274 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Tpr4g2691 274 Gene3D - 13 115 IPR015300 -
Tpr4g2691 274 Gene3D - 155 273 IPR015300 -
Tpr4g2691 274 MobiDBLite consensus disorder prediction 134 148 - -
Tpr4g2691 274 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 16 142 - -
Tpr4g2691 274 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 142 269 - -
Tpr4g2691 274 PANTHER B3 DOMAIN-CONTAINING 142 269 - -
Tpr4g2691 274 PANTHER B3 DOMAIN-CONTAINING 16 142 - -
Tpr4g2691 274 CDD B3_DNA 20 112 IPR003340 GO:0003677
Tpr4g2691 274 SUPERFAMILY DNA-binding pseudobarrel domain 171 268 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2691 Tpr-Chr4 29855090 29857254 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2691 136 274 B3 DNA Binding Superfamily AT3G18990 35.570 1.71e-16 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr4g2691 B3 1.5e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2691 - - mtr:MTR_5g070440 404.06