Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2690 ATGAAGCCTCGCCGTGGAAGGTGTGTCCGGCCATCGGTGCCGGAGAATGAACCGAAGCATTTTATGAAAGCCATACTTCCTTCACCCATTCATGCAAAACAAATTAGAATTCCAGACGAATTTATAACAAGATTTGGAAATGAACTCAAGAATGTTGCTACAATCGCTGTTCCTGATGGTTGTGTTTGGGAAATGGAACTGAAGAAATGCGACGAACATGTTTTCTTTTGCAACAGATGGCAAGAGTTCGTCGAATACTATTCTATAGGATATGGTTTCTATCTGTCTTTCAAATATGAAGGGAATTCAAATTTTAGTGTTATTATATTTGATGCAACTTCTGTTGAAATTTGCTATCCTTTCAAAACTCCAAGTACTAATGAAGAACCAAACACAAAGTATCATAATCCTAGGAAAAGGTCCAAGGTTGAAACAAGTGAGAGTTGTCGGGAAAAGGCCAAAAGCTTGTCTAAAGATGCTTCCAAAAGAGCTAAGGATGCTGCTAATGTATTCAACCCAAATAATCCATATTTTTGTTCCAAAGTCGCTAAGGGAAGATGTGTGCATGTTCCTTCTGATTTTGCTTTCAAGTATCTGAAGCTAAATGTTCCTATAAAACTCCAAAATTCTCATGGGGAGCAGCAGGAAGTTTTTTGCATAGTGCCTGATTCCAGATCATCATCAATGCGAATATCGAAAGGATTTTCTAAATTTCAAAGAAACAACAACCTGTCAAATGGAGATTATTGTGGGTTTGAGCTGATCAAGAAGAAGCCGGTTGTGCTAAAAGTCACGATGTTTCGTGCGGTTGATTATCGCAATTAA 825 0.3818 MKPRRGRCVRPSVPENEPKHFMKAILPSPIHAKQIRIPDEFITRFGNELKNVATIAVPDGCVWEMELKKCDEHVFFCNRWQEFVEYYSIGYGFYLSFKYEGNSNFSVIIFDATSVEICYPFKTPSTNEEPNTKYHNPRKRSKVETSESCREKAKSLSKDASKRAKDAANVFNPNNPYFCSKVAKGRCVHVPSDFAFKYLKLNVPIKLQNSHGEQQEVFCIVPDSRSSSMRISKGFSKFQRNNNLSNGDYCGFELIKKKPVVLKVTMFRAVDYRN* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2690 274 CDD B3_DNA 180 268 IPR003340 GO:0003677
Tpr4g2690 274 PANTHER B3 DOMAIN-CONTAINING 16 143 - -
Tpr4g2690 274 PANTHER B3 DOMAIN-CONTAINING 143 269 - -
Tpr4g2690 274 MobiDBLite consensus disorder prediction 128 161 - -
Tpr4g2690 274 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 143 269 - -
Tpr4g2690 274 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 16 143 - -
Tpr4g2690 274 MobiDBLite consensus disorder prediction 132 161 - -
Tpr4g2690 274 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Tpr4g2690 274 Gene3D - 12 114 IPR015300 -
Tpr4g2690 274 Pfam B3 DNA binding domain 21 112 IPR003340 GO:0003677
Tpr4g2690 274 Pfam B3 DNA binding domain 180 269 IPR003340 GO:0003677
Tpr4g2690 274 SUPERFAMILY DNA-binding pseudobarrel domain 171 268 IPR015300 -
Tpr4g2690 274 CDD B3_DNA 19 111 IPR003340 GO:0003677
Tpr4g2690 274 Gene3D - 156 273 IPR015300 -
Tpr4g2690 274 SUPERFAMILY DNA-binding pseudobarrel domain 15 112 IPR015300 -
Tpr4g2690 274 SMART B3_2 21 113 IPR003340 GO:0003677
Tpr4g2690 274 SMART B3_2 178 270 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2690 Tpr-Chr4 29850177 29852496 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2690 136 271 B3 DNA Binding Superfamily AT3G18990 36.620 9.79e-17 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr4g2690 B3 3.3e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2690 - - mtr:MTR_5g070440 397.897