Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2671 ATGATTAGAGGAGGAAATTATGGTGTCAATAGCGTTAAAATCTTTGGCAATGAAAATATAAATTCCATTGACCCTTTCATGGATAGATTCTTATGGGATCAAATGATGACTCACTACCCTAACCATCAACAAAATAGTGCAAGTGTTTTTCCTTACTCTTATGGTTCAAACTATGAGTTTATGTGGCCAAATGCTCAAGAATCAATTAATCGGGTCATAGCAAATGAAGAAGCTTCGGAGTGGAATAACTTCAACCAAAACCCTACATTTTGCCTTAAGGATATTCATGGTTATGGTGAAAACACCAAAATTTTGGAAAGCAAATCTACAAAAGATACTTCTATGGTTTTGATCAAAGGACAATGGGCAAATGAAGAAGACAGGAAATTGATAAGGTTGGTGAAGCAATATGGTGAAAGAAAATGGGCTAAAATAGCTGAGAAGTTAGAAGGAAGAGTTGGCAAACAGTGTAGAGAGCGATGGCATAATCATTTGCGTCCTGATATTAAGAAGGATAATTGGAGCGAAGAAGAAGAGAAAATATTAGTAGCTATGCATGCAAAAATTGGAAACCGTTGGTCTGAGATCGCAAAGAAAATTCCCGGAAGAACAGAAAATGCCATAAAAAATCACTGGAATGCTACAAAAAGAAGACAAAACTCACGAAGAAAGAACAAGAAGAATGAAACTTCTAAGGGATCAAAACCAAAGTCCTCCGTACTTGAAGACTATATTAAAAAAACCAACACATCCATCACTACCAATAAAATTACCAACATACCCTCTTCGTCTCATTCAACACTCTCTCAAAAACTTCAAGAAAATCAATCGAACCTTTTGTTCAATGAATTACCCTCTGATTCTTTTTCCAATGAATATTTGAAATTTTTTCAAGGTAATATTGTTGATGATGTGAATGAGAGTGGGTTTGTTAATTCAATCCATCAATACCCAAATTACAACATGCACTTGGATGAGACTACTCCTATGAACAATTTCCTTTCTTATGATCTTTACCTCTCTCAATTGTTGAACTTATAG 1041 0.3487 MIRGGNYGVNSVKIFGNENINSIDPFMDRFLWDQMMTHYPNHQQNSASVFPYSYGSNYEFMWPNAQESINRVIANEEASEWNNFNQNPTFCLKDIHGYGENTKILESKSTKDTSMVLIKGQWANEEDRKLIRLVKQYGERKWAKIAEKLEGRVGKQCRERWHNHLRPDIKKDNWSEEEEKILVAMHAKIGNRWSEIAKKIPGRTENAIKNHWNATKRRQNSRRKNKKNETSKGSKPKSSVLEDYIKKTNTSITTNKITNIPSSSHSTLSQKLQENQSNLLFNELPSDSFSNEYLKFFQGNIVDDVNESGFVNSIHQYPNYNMHLDETTPMNNFLSYDLYLSQLLNL* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2671 346 MobiDBLite consensus disorder prediction 215 230 - -
Tpr4g2671 346 PANTHER MYB TRANSCRIPTION FACTOR 5 345 - -
Tpr4g2671 346 Pfam Myb-like DNA-binding domain 122 180 - -
Tpr4g2671 346 Gene3D - 118 170 - -
Tpr4g2671 346 PANTHER MYB PROTEIN-RELATED 5 345 - -
Tpr4g2671 346 SUPERFAMILY Homeodomain-like 118 212 IPR009057 -
Tpr4g2671 346 Gene3D - 173 247 - -
Tpr4g2671 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 169 IPR017930 -
Tpr4g2671 346 ProSiteProfiles Myb-like domain profile. 166 216 IPR001005 -
Tpr4g2671 346 SMART sant 170 218 IPR001005 -
Tpr4g2671 346 SMART sant 118 167 IPR001005 -
Tpr4g2671 346 ProSiteProfiles Myb-like domain profile. 119 165 IPR001005 -
Tpr4g2671 346 CDD SANT 122 165 IPR001005 -
Tpr4g2671 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 170 220 IPR017930 -
Tpr4g2671 346 MobiDBLite consensus disorder prediction 204 242 - -
Tpr4g2671 346 CDD SANT 173 216 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2671 Tpr-Chr4 29580052 29583997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2671 82 345 MYB Transcription Factor Family AT5G58850 44.884 1.18e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr4g2671 Myb_DNA-bind_6 7.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2671 K09422 - aprc:113874412 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2671 4 29580052 29583997 Tpr4g2671 4 29580052 29583997 ECH