Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2652 ATGAAGTGGGAAATGGAAATTCTCCCTTCTACATCATTCACACCAAACACCAATTGGTGTATAGAAGATAACAATACAACAAAATGGACACCTGAAGAGAACAAGCTATTTGAAAATGCTCTTGCAGTTCATGATAAAGATATACCGGATCGATGGCATAGAGTGGCGGAAATGATACCTGGAAAGACGGTTGGTGATGTTATGAAACAGTACAAGGAATTAGAAGATGATGTTTGTAATATTGAAGCTGGATTGATTCCAGTTCCTGGTTATAATACTCCTACTTCACCTTTTACCTTAGATTGGGTGAATAGTTCTAGTTATGATGGATTCAAAGGTAGTGGAAAGAGATCTCCTATAGCTAGAGCAACTGAGCATGAAAGGAAGAAAGGAGTTCCATGGACTGAAGAAGAACACAAATTGTTTCTACTAGGTCTGAAGAAGTATGGCAAAGGTGATTGGAGAAATATTTCGCGCAATTTCGTCATCACAAGAACACCAACTCAAGTAGCTAGCCATGCTCAAAAGTATTTCATAAGACAACTTTCAGGAGGCAAAGACAAGAGAAGAGCTAGCATACATGACATAACAACAGTTAATCTCTCAGAAACTACAAGAACCTGTTCTTCAGAAGACACCAATAATACATCCACTTCACCACAGAATTCCATGTTACTCTCACACCACCAACAACAACCAAGTTCTACTACTACAAATTTTCATTGGAGGAATAATCAACAAAATGCTATGGCTTTCAATCCAGCACATGAACAAGTTTTTATGGCTCCTCATGGTGTTAATTCCTATGAGATTAAAATGCAGGACCAAAATTTTCAAAAGGGTCTTGTTAATGAGACTTCTTATCCTCACAATATGGTTTTCCAAATGCAACATTCATCACAACATTATTCACATGCATAA 921 0.3735 MKWEMEILPSTSFTPNTNWCIEDNNTTKWTPEENKLFENALAVHDKDIPDRWHRVAEMIPGKTVGDVMKQYKELEDDVCNIEAGLIPVPGYNTPTSPFTLDWVNSSSYDGFKGSGKRSPIARATEHERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLSETTRTCSSEDTNNTSTSPQNSMLLSHHQQQPSSTTTNFHWRNNQQNAMAFNPAHEQVFMAPHGVNSYEIKMQDQNFQKGLVNETSYPHNMVFQMQHSSQHYSHA* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2652 306 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 129 181 IPR006447 GO:0003677
Tpr4g2652 306 CDD SANT 133 178 IPR001005 -
Tpr4g2652 306 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 282 IPR043363 -
Tpr4g2652 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 126 182 IPR017930 -
Tpr4g2652 306 Gene3D - 22 88 - -
Tpr4g2652 306 SUPERFAMILY Homeodomain-like 128 181 IPR009057 -
Tpr4g2652 306 CDD SANT 28 74 IPR001005 -
Tpr4g2652 306 Gene3D - 132 182 - -
Tpr4g2652 306 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 282 - -
Tpr4g2652 306 ProSiteProfiles SANT domain profile. 134 182 IPR017884 -
Tpr4g2652 306 SMART sant 25 77 IPR001005 -
Tpr4g2652 306 SMART sant 130 180 IPR001005 -
Tpr4g2652 306 ProSiteProfiles SANT domain profile. 27 77 IPR017884 -
Tpr4g2652 306 ProSiteProfiles Myb-like domain profile. 126 178 IPR001005 -
Tpr4g2652 306 SUPERFAMILY Homeodomain-like 27 82 IPR009057 -
Tpr4g2652 306 Pfam Myb-like DNA-binding domain 27 72 IPR001005 -
Tpr4g2652 306 Pfam Myb-like DNA-binding domain 133 178 IPR001005 -
Tpr4g2652 306 ProSiteProfiles Myb-like domain profile. 21 75 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2652 Tpr-Chr4 29433273 29436316 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr4g2652 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2652 - - gmx:100784163 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2652 4 29433273 29436316 Tpr4g2652 4 29433273 29436316 ECH
Tpr4g2652 4 29433273 29436316 Tpr4g2436 4 26095077 26097481 ECH
Tpr4g2652 4 29433273 29436316 Tpr3g3768 3 42058349 42061221 ECH
Tpr6g2320 6 25378150 25381159 Tpr4g2652 4 29433273 29436316 ECH