Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2640 ATGAAGAAATCAGCAAGCAACAAATTGCAATATCAATCTAGTCAAGGAAAAAAAATTTCTAATTTTCAAGATAGTAAAGAAATTGATTCCACAAAGAAGCACAATCCTAAGACTAATTCAGCACTGAAAAGTTTCAAATCTGCTGTCAGAAAATTTGCTTTGATTTTCATTGGTAAAAGAAAAACAGCTTCAGAACTTATTGGAAGTGGTGACAGAAAAAATACATCAAAACCAAGATTGGTGGTATCATCTTCAACTGATTTATCATCTGGAAGTACCAACAAGAACTCATCAAACTGGAAATTTTCTTATTCCTATGCATCATCTAGTACTACAAGTGAGCAGCTTGGAGTTGGGAATTTCACTTTTGATGAAATTTACAAGTCAACTGCAAAGTTCTCTCCAGATAATCAGATTGGAGAAGGTGGTTTTGGAACTGTCTATAGAGGAAAGCTTAATGATGGAACTATTGTCGCTGTGAAGCGTGCAAAGAAGGAAGCATTGCAAAGTCACCTATACGAGTTCAAGAACGAAATATACACTTTATCGAAAATTGAGCACCTGAATCTTGTGAGGTTATACGGATATTTGGAGCATGGAGACGAGAAGCTTATTGTTGTTGAGTATGTTGCTAATGGAAATCTTAGAGAACATTTAGATGGCATACGAGGCAATGGACTAGAAATCGGTGAGCGTCTAGACATAGCAATCGATGTAGCTCACGCAATAACTTACCTTCATATGTACACAGATAATCCAATTATACATAGAGACATCAAAGCATCAAACATCTTAATTAGCGAGAATCTAAGGGCTAAAGTGGCAGACTTTGGTTTTGCAAGGTTGTCCGAAGACCCTGGTGCAACTCATATTTCAACGCAAGTTAAAGGAACAGCCGGATATATGGATCCTGAGTATTTGAGAACTTATCAGCTTACAGAAAAAAGTGATGTTTATTCCTTTGGTGTATTGCTTGTTGAAATGATGACAGGAAGACATCCGATTGAACCTAAGAAAAAAATTGATGAGAGAGTTACAATCAGATGGGCAATGAAGACACTAAAGAAAGGAGAAGCTGTGTTTGCCATGGATCCAAGACTTAGAAGAAGTCCTGCCTCCATCAAGGCAATGAAGAAGGTTTTCAAGCTAGCTTTTCAATGCCTTGCGCCTTCCATACATTCGAGGCCACCTATGAAGAATTGCGCAGAGGTTCTGTGGGCCATTCGTAAAGATTTTAAAGACGAAAGTACTCCTCTTCCTACCTTACCTTCTCATCAATCTGAAAATTTTCCTCAAAGAGAAAGGAATAAGCATATGTTAGGTATTGAAGATGAAGATAGCTACAAATTTACCTCTGCACCGAATCATATTCGTTCGTGA 1380 0.3754 MKKSASNKLQYQSSQGKKISNFQDSKEIDSTKKHNPKTNSALKSFKSAVRKFALIFIGKRKTASELIGSGDRKNTSKPRLVVSSSTDLSSGSTNKNSSNWKFSYSYASSSTTSEQLGVGNFTFDEIYKSTAKFSPDNQIGEGGFGTVYRGKLNDGTIVAVKRAKKEALQSHLYEFKNEIYTLSKIEHLNLVRLYGYLEHGDEKLIVVEYVANGNLREHLDGIRGNGLEIGERLDIAIDVAHAITYLHMYTDNPIIHRDIKASNILISENLRAKVADFGFARLSEDPGATHISTQVKGTAGYMDPEYLRTYQLTEKSDVYSFGVLLVEMMTGRHPIEPKKKIDERVTIRWAMKTLKKGEAVFAMDPRLRRSPASIKAMKKVFKLAFQCLAPSIHSRPPMKNCAEVLWAIRKDFKDESTPLPTLPSHQSENFPQRERNKHMLGIEDEDSYKFTSAPNHIRS* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2640 459 Gene3D Phosphorylase Kinase; domain 1 93 209 - -
Tpr4g2640 459 SMART serkin_6 133 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2640 459 Gene3D Transferase(Phosphotransferase) domain 1 210 419 - -
Tpr4g2640 459 PANTHER CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1 22 434 - -
Tpr4g2640 459 ProSitePatterns Protein kinases ATP-binding region signature. 139 165 IPR017441 GO:0005524
Tpr4g2640 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Tpr4g2640 459 SUPERFAMILY Protein kinase-like (PK-like) 111 409 IPR011009 -
Tpr4g2640 459 MobiDBLite consensus disorder prediction 1 21 - -
Tpr4g2640 459 CDD STKc_IRAK 139 405 - -
Tpr4g2640 459 MobiDBLite consensus disorder prediction 68 88 - -
Tpr4g2640 459 ProSiteProfiles Protein kinase domain profile. 133 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g2640 459 PANTHER RECEPTOR-LIKE PROTEIN 55 22 434 - -
Tpr4g2640 459 Pfam Protein tyrosine and serine/threonine kinase 136 405 IPR001245 GO:0004672|GO:0006468
Tpr4g2640 459 MobiDBLite consensus disorder prediction 22 36 - -
Tpr4g2640 459 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2640 Tpr-Chr4 29312310 29316236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2640 105 398 Receptor kinase-like Gene Family AT1G79620 43.189 4.39e-69 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Tpr4g2640 PK_Tyr_Ser-Thr 4.8e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2640 - - gmx:100788236 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2640 4 29312310 29316236 Tpr4g2640 4 29312310 29316236 ECH
Tpr4g2640 4 29312310 29316236 Tpr3g4254 3 47380108 47384690 PCT