Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2634 ATGGCAGAGGGAGAGAGGGTGGTGGAACCAGAACCAGAACAAGAACAGGAACAAGAATCAGAACCAGAAACAAAGGAGACATCAACAACAATGTTGAAACACAACCAGACAATGCAGTTATTATCAGAAAAACTAACAAATGGAAACCTTAACTCAAAGATTGAAGCTGCAAGAGAAATCAGAAGAATGGTTCGAAAATCTTCAAAAACACGCTCCAAACTTGCTGATACTGGTGTCATTCAACCTCTTATCTTCATGCTTTCTTCTTCCAACTTTGATGCTCGTCATTCCTCTCTTCTTGCTCTCCTCAATCTTGCTGTTCGTAATGAAAGAAACAAGGTCCAAATAGTGACAGCTGGTGCAGTGCCTCCTCTGGTGGAGCTTCTCAAGATACAAGATAACGGTATACGAGAATTGGCTACAGCTGCAGTCTTGACACTCTCATCTGCTGCAACCAACCAGCCGATTATTGCTTCTTCTGGAGCTGCTCCTCTCCTTGTTCAGATTCTCAAATCTGGAAGTGTTCAAGGCAAAGTTGATGCTGTTACAACCCTCCATAATCTCTCCACTGGCATTGAGAACTCCATTGAACTTCTTGACGCTAGTGCTGTTTCCCCTCTTATCAACCTCCTTAAAGACTGTAAGAAGTACTCAAAGTTTGCAGAAAAAGCTACATCACTACTCGAAATCCTTTCCAACTCTGAAGAGGGACGAATTGCAATCTCGCTGGCAGACGGTGGAATTTTGACTCTAGTAGAGACAGTTGAAGACGGATCACTTATCAGCACAGAGCATGCTGTTGGAGCATTGCTATCATTATGCCTAAGCTGCCGGGATAAATATCGGGAACTAATTCTTAAAGAAGGAGCAATTCCGGGTCTGTTACGGCTGACAGTAGAGGGCACAACCGAATCTCAAGATAGAGCACGCATGCTTCTGGATTTGCTCAGAGATTCTCCTCAAGAAAAGAAACTAGACTCCTCGGTTTTGGAAAAAATTGTTTTGGACATTGCTGAACAGCTAGATAGAGTAGATAAAACTGCTGAAACTTCGAAATGA 1059 0.4287 MAEGERVVEPEPEQEQEQESEPETKETSTTMLKHNQTMQLLSEKLTNGNLNSKIEAAREIRRMVRKSSKTRSKLADTGVIQPLIFMLSSSNFDARHSSLLALLNLAVRNERNKVQIVTAGAVPPLVELLKIQDNGIRELATAAVLTLSSAATNQPIIASSGAAPLLVQILKSGSVQGKVDAVTTLHNLSTGIENSIELLDASAVSPLINLLKDCKKYSKFAEKATSLLEILSNSEEGRIAISLADGGILTLVETVEDGSLISTEHAVGALLSLCLSCRDKYRELILKEGAIPGLLRLTVEGTTESQDRARMLLDLLRDSPQEKKLDSSVLEKIVLDIAEQLDRVDKTAETSK* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2634 352 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 120 162 IPR000225 GO:0005515
Tpr4g2634 352 Pfam Armadillo/beta-catenin-like repeat 109 147 IPR000225 GO:0005515
Tpr4g2634 352 SMART arm_5 234 275 IPR000225 GO:0005515
Tpr4g2634 352 SMART arm_5 150 190 IPR000225 GO:0005515
Tpr4g2634 352 SMART arm_5 191 233 IPR000225 GO:0005515
Tpr4g2634 352 SMART arm_5 108 149 IPR000225 GO:0005515
Tpr4g2634 352 SMART arm_5 67 107 IPR000225 GO:0005515
Tpr4g2634 352 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 78 120 IPR000225 GO:0005515
Tpr4g2634 352 Gene3D - 36 159 IPR011989 -
Tpr4g2634 352 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 16 342 - -
Tpr4g2634 352 PANTHER U BOX DOMAIN-CONTAINING 16 342 - -
Tpr4g2634 352 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 202 246 IPR000225 GO:0005515
Tpr4g2634 352 SUPERFAMILY ARM repeat 32 322 IPR016024 -
Tpr4g2634 352 MobiDBLite consensus disorder prediction 1 29 - -
Tpr4g2634 352 Gene3D - 160 325 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2634 Tpr-Chr4 29119319 29124847 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2634 17 318 U-box Gene Family AT3G54790 36.688 2.59e-38 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2634 K08332 - gmx:100782472 487.648