Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2629 ATGGGTGCCGTCGGTGAGTGTTTACCTCCGCCGCACGCGGAGGAGCTGGCGGTTCTGTCTCTTAACAAGCTGCCGTTAGGTTTTCGGTTTCGTCCTACTGATGAGGAAGTCATCGATTACTATCTTCGACAGAAGATCAATGGAAACGGTGATGAAGTTTGGGTTATTCGTGAAGTTGATGTTTGTAAATGGGAGCCTTGGGATTTACCTGATTTGTCGGTGGTAAGAAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCGCAGGATCGGAAGTATCCAAATGGAAGTAGGTTGAACCGAGCAACAACTCATGGGTATTGGAAGGCAACTGGCAAGGATCGGCGGATTAAGTCTGGAAACACGTTGATTGGAATGAAGAAGACTCTTGTTTTCTATGCTGGCCGTGCTCCGAAAGGGAAGAGGACCAATTGGGTTATGCATGAGTATAGGCCTACCTTGAAGGAGCTCGATGGTACCAACCCTGGACAGAACCCATATGTCATTTGTCGCTTGTTTAAGAAGCTAGATGAGAGTCTCGAAAGTTCAAATTGTGGTGAAGTGGAGCAGACTACTTCAAATCCTACGTCTGCAGAGTACTCTCCAGAAGATATACAGTCTGATCTAAATATGGTTCCTGTATCTTCCTCACCAGCCACAGAAGATTATAGGCACCTAGCAGCTATTCCTGAGAATTCTGAGGAGGCAATATCCAACGTTATAACCCCAGCTGATTGCTATAGCGATGCATGCAATGCTTCTGATGCACAATATCAAATTGTAGAAGTACCAGCTGCAGAGGATGATCAACTGTTGAATTTGGACATATTTGAGGACCCACAATTTGAGCCATTTGATGATAAATTATTCTCCCCGGTCCACGCACATTTTCCACGAGAGTTTAATTATCAACCCAACACCGAATTCGAATTTCAGTATGGTACAAATGAATTTCAGTATGGCACAAATGAAACAGATGTTTCACACTTTTTCAACTCGGCTGTTAATTGGGATGAGTTCTCCTATGAGGCGTCTAGTTCATGCTTCCTTAGTCATAAGGACAATGGTTCGTGCAGTGGCTCAGATGCGGAAATGGCCAAAACGACGATGCATCTGCAAGCAGATTCAGGAAATAGTGATGTAGGATTGTTCCAGAACAACTCCCAGATGACTTTTTCAACTGATTTTAATATCGGCCAAACGCCCGCTGTGGTCAATGAATATGAGCAATCAACGAATTTGACAGCACGAGGTGACACTGGAATCATGTCAAGGACTCAACATGGACAGAGTGAACAGCCAAATATGAACCCACAAGGTAGTGCACCGAGAAGAATACAGTTGGAAGGATTTGTTACACATTCCCTTGCTTCTGAGGAGACGATAAAAGATGAAAGTTGTGCACCTGAATATGAGCAATCAAGGGATACTGTTGTCCAGGGTGGCACTGGAATCAGGGTAAGGACTCGACAAGGAAGAAACGAACAGCCAAACATGAACCCAGTGATGCAAGCACAAGGTAGTGCACCGAGAAGATTACGATTGGGAGGATTTGTTACGCGTTCGATTGTTTCCGAGGAGACAACAAAAAATGAGAGTTCTGCACCAGAAAACCCTAACTCAGAAACCATAATTCCCACAGTATTGGGCAGAAGGGTCCGTTACACATCAAAGAGATCCTCCAATCGTTCCATGTGGTTTTCTGTTCTTGCAGTTTCTGCCACTGTACTGGTCTCACTTGTATTGCTTGTTAATATTTGGGGATATACTTAG 1770 0.4441 MGAVGECLPPPHAEELAVLSLNKLPLGFRFRPTDEEVIDYYLRQKINGNGDEVWVIREVDVCKWEPWDLPDLSVVRNKDPEWFFFCPQDRKYPNGSRLNRATTHGYWKATGKDRRIKSGNTLIGMKKTLVFYAGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVICRLFKKLDESLESSNCGEVEQTTSNPTSAEYSPEDIQSDLNMVPVSSSPATEDYRHLAAIPENSEEAISNVITPADCYSDACNASDAQYQIVEVPAAEDDQLLNLDIFEDPQFEPFDDKLFSPVHAHFPREFNYQPNTEFEFQYGTNEFQYGTNETDVSHFFNSAVNWDEFSYEASSSCFLSHKDNGSCSGSDAEMAKTTMHLQADSGNSDVGLFQNNSQMTFSTDFNIGQTPAVVNEYEQSTNLTARGDTGIMSRTQHGQSEQPNMNPQGSAPRRIQLEGFVTHSLASEETIKDESCAPEYEQSRDTVVQGGTGIRVRTRQGRNEQPNMNPVMQAQGSAPRRLRLGGFVTRSIVSEETTKNESSAPENPNSETIIPTVLGRRVRYTSKRSSNRSMWFSVLAVSATVLVSLVLLVNIWGYT* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2629 589 Gene3D NAC domain 33 178 IPR036093 GO:0003677|GO:0006355
Tpr4g2629 589 MobiDBLite consensus disorder prediction 182 201 - -
Tpr4g2629 589 SUPERFAMILY NAC domain 18 174 IPR036093 GO:0003677|GO:0006355
Tpr4g2629 589 Pfam No apical meristem (NAM) protein 25 150 IPR003441 GO:0003677|GO:0006355
Tpr4g2629 589 ProSiteProfiles NAC domain profile. 24 174 IPR003441 GO:0003677|GO:0006355
Tpr4g2629 589 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 19 427 - -
Tpr4g2629 589 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 19 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2629 Tpr-Chr4 29016875 29021457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2629 16 492 NAC Transcription Factor Family AT4G35580 39.612 1.48e-96 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr4g2629 NAM 8.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2629 - - mtr:MTR_5g069030 785.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2629 4 29016875 29021457 Tpr3g2957 3 31957341 31960833 PCT