Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2627 ATGAACTTTTCTTGTGCCATAACAAAACCCAATTTTCCATTTTGCCAAACAGAAATGCCAATTCTAACATTTGGTCATTCTAAGTTAAGTGCTACCCTAGCTCTTCAATTGCCATGTAGTTGTGTTAGGAAGATAAGGTTGATTACAAAGTTTCAATGTTCTGTTGCTGGTAGGACATATACTTCTAGGACAGGTGATTCGCGGGGACCCAAACGGGGTTCTGGCGAAATTCAAAAAAGGAAGGGAGGACCCTCGTCATCATATCTTGGTTACATTCGTCCTAGTTTATCTGAAATGAAGAACGATAAGGTGGCGTTACGTGAAAATGTTTATCAGTTCTTGCGAGGAATTGGCATTGTTCCTGATGAGCTTGATGGTCTTGAACTTCCTGTTACGGTTGATGTTATGAAGGAGCGGGTTGATTTTCTTCATAACTTGGGGCTTACAATTGAAGATATTAATAATTATCCTCTTGTTCTTGGTTGTAGCGTCAAGAAGAATATGGTTCCTGTGCTTGACTACCTTGGTAAATTGGGAGTTAGGAGATCCACGTTAACACAGTTTTTGCGGAGATACCCGCAAGTGCTTCATGCTAGTGTGGTTGTGGATCTTGTACCGGTGGTAAAGTATCTTCAAGGGATGGATATCAAGCTCAATGATATTCCTCGTGTTCTTGAGAGGTATCCTGAACTAATGGGATTCAAACTTGAGGGTACCATGAGCACATCAGTTGCTTATTTGGTTGGAATTGGTGTTGATAGAAGAGAACTCGGAGGTGTCTTAACTAGATACCCGGAGATTTTGGGGATGCGGGTTGGTAGAATCATCAAGCCTTTTGTGGAGTATTTGGAAAGCTTGGGTATTCCACGGCTAGCCATTGCTAGATTGATAGAGAAACAACCTTATATTCTTGGATTCGATCTGGACGAGAAGGTGAAGCCAAATGTCAAATCCCTTGAAGAGTTTAATGTTAGGAAAACATCACTTGCATCTATAATTGCTCAGTATCCTGAAATCATTGGAACTGACCTAGAGCCGAAGCTTGCCAATAAGAGAAATGTGCTTAATTCTGTGCTTGATTTGGATCATGAGGATTTCGGCTTAATTGTTGAGAAGATGCCGCAGGTAGTTAGCCTCGGTAGTACACCTATGCTGAAGCACGTTGATTTTCTTAAGGATTGCGGGATTTCCGTGGATCAAATGAGGAAGATGATTGTTGGATGCCCTCAACTACTTGCTTTAAACATTGATATCATGAAACTTAGCTTTGATTACTTCCAAAGTGCGATGGAAAGGCCTTTGGAAGACTTGGTTGAATTTCCAGCATTCTTCACATATGGTTTGGAGTCAACAATAAAACCTAGGAATAACATGGTTACCAAGAAAGGATTGAAGTGTTCTCTGGCATGGATGCTTAATTGTTCTAATGAGAAATTTGAGCAACGAATGGACTATGATACTATTGACATGGAAGAGATGGAAATGGAACCGTCATTTGACATGAATTCATTGATGCGACCAAGGAATGATGACTCAGATTCTGATTATGAAGACAGTGATTTTGAAGATGACGATGAATAA 1581 0.4035 MNFSCAITKPNFPFCQTEMPILTFGHSKLSATLALQLPCSCVRKIRLITKFQCSVAGRTYTSRTGDSRGPKRGSGEIQKRKGGPSSSYLGYIRPSLSEMKNDKVALRENVYQFLRGIGIVPDELDGLELPVTVDVMKERVDFLHNLGLTIEDINNYPLVLGCSVKKNMVPVLDYLGKLGVRRSTLTQFLRRYPQVLHASVVVDLVPVVKYLQGMDIKLNDIPRVLERYPELMGFKLEGTMSTSVAYLVGIGVDRRELGGVLTRYPEILGMRVGRIIKPFVEYLESLGIPRLAIARLIEKQPYILGFDLDEKVKPNVKSLEEFNVRKTSLASIIAQYPEIIGTDLEPKLANKRNVLNSVLDLDHEDFGLIVEKMPQVVSLGSTPMLKHVDFLKDCGISVDQMRKMIVGCPQLLALNIDIMKLSFDYFQSAMERPLEDLVEFPAFFTYGLESTIKPRNNMVTKKGLKCSLAWMLNCSNEKFEQRMDYDTIDMEEMEMEPSFDMNSLMRPRNDDSDSDYEDSDFEDDDE* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2627 526 Pfam mTERF 172 480 IPR003690 GO:0003690|GO:0006355
Tpr4g2627 526 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF4, CHLOROPLASTIC 30 513 - -
Tpr4g2627 526 MobiDBLite consensus disorder prediction 62 84 - -
Tpr4g2627 526 Gene3D Transcription termination factor 3, mitochondrial 277 488 IPR038538 -
Tpr4g2627 526 Gene3D Transcription termination factor 3, mitochondrial 140 276 IPR038538 -
Tpr4g2627 526 MobiDBLite consensus disorder prediction 496 526 - -
Tpr4g2627 526 PANTHER CGI-12 PROTEIN-RELATED 30 513 IPR003690 GO:0003690|GO:0006355
Tpr4g2627 526 SMART mt_12 222 253 IPR003690 GO:0003690|GO:0006355
Tpr4g2627 526 SMART mt_12 367 397 IPR003690 GO:0003690|GO:0006355
Tpr4g2627 526 SMART mt_12 330 362 IPR003690 GO:0003690|GO:0006355
Tpr4g2627 526 SMART mt_12 258 289 IPR003690 GO:0003690|GO:0006355
Tpr4g2627 526 SMART mt_12 150 181 IPR003690 GO:0003690|GO:0006355
Tpr4g2627 526 SMART mt_12 294 325 IPR003690 GO:0003690|GO:0006355
Tpr4g2627 526 SMART mt_12 402 433 IPR003690 GO:0003690|GO:0006355
Tpr4g2627 526 SMART mt_12 434 465 IPR003690 GO:0003690|GO:0006355
Tpr4g2627 526 SMART mt_12 186 217 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2627 Tpr-Chr4 29006441 29008863 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr4g2627 mTERF 2.9e-106 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2627 K15032 - gmx:100785223 785.408