Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2616 ATGGCTTTGACTGTTGATAATCGTAACATGTTTTCAAACATTGATGAGATCAATTCTGATAGATCAACTTGGAATTTGAAAGCAAAGATCATAAGACTTTGGCAAGTGAGTGATTTTAATCGACCTAATGTTCCTTTTTCTGTTGAAATGGTGTTGATGGATTCAGATGGTGCTAAGATTCATGCGACTATCAAAAAAACTCTTATTTACAAGTTTAAACATGATTTAATTGAGGGAAAAGTGTATTCTTTTGAAAATCTTGGTGTGGCTTCCAATAATGGAGGTTATAGGACCACACATCATCCATACAAACTGAACTTCCAGTTTGGCTCCTTTGTTCAAAGGTTGTCAAATTGTGATATTGTGAAATCTCCATTTACCTTTGTTCCAATTGCTGAAGTTGTAGGTGGTTTATATGACACTGATTTCTTAGTTGATGTAATTGGTTTCTTAACTGAGATTGGTCAGGAACGTGAAATAACTAATCAAAATGGTAGCACAACAAAGCTGAATGTCATTTCCTTGGAAGCTGATGGGCATAAGCTTCAGTGTACACTTTTTGGTCCATATGTTGATGAACTGAATACCTTTGTTGGAGCTGGTGATCTAAACAATGCTGTGGTTATTGTTCAGCTTGCAAAAGCGAAGACCTTCCAAGACAAGATACACATACAGAATTGCATGAATTGTTCTGTTTTGCTATTTAACCCAAATTGTGAAGAAAGTCAGTCCTTTAGGGCAAGGTGCGTCGGTTCCGACGAGAATCCTTCTCCATTGACCTTTACTCAACTCAGTAACGAGCCAACTGTGACCCCACTTGATGAGTTTCTGTACAATACTCCCAAGGCAACATTGCAAGATCTCAAGGATGCTACAAAAGAATCATCACATGTTGTATCTGCTACTGTGAAGAGGATTTTAAATCCTGATAGTTATTGGTATACATCGTGTTTTTGCAGTAAAGGTGTTATACCAGATTCAAGGTTATGGTTTTGTGAAAAGTGTAATAGGCATGTTCCAAAGGTTGTTCCTAGGTTTTGTGTCAAACTCAGAGTCATGGATCATACTGATTCAGCCACTTTAGTTGTGTTTGACAAAGAAGCAAGTGGGATATTTAATATGTCTTGTGCCGATATGCTTCAACTTGGCGATGCTGATAATGATGGTGAGGGGATTGTGCCACCTCGGATTGATGACTCATTGGTTAATCAAACTTGGCTTTTTAAGGTTGAAACTAAACCTTCTCAAAATCCAAGGTTTGAGCAATCTTTTCGTGTTAGGAAGATTTGTACCGATGATGGTATCATTAAGCAGTTTAAGGACAAGTGGGATAGTGAGGATGCTGTACGTACTAAAAAAAGAAATGAGGGTGGTTCTTTGAGTACTCTGCTTGATAAAGGGAAAGATGTTTATGTTGGTGGCACCTCAAATGTACTTTCTCAGGAATGTCAAAACTTTAGTGGGGATTCTGAAAAGGGAAAGGGTCTGATTGTCGATGGAACACCCGTTGAAGTCTCACAAGATTTGATGCTGAAATTTTCAGAATCTGTTGTTAATCTTGACGATGATTCTGTTAATACTTCTTTTTCTGTTAAGTCAATGACATATGGAAATAAGCAATTGACATATGTTGCTGCTGTTAACCCAACGACCTCTGCATTGGCTGTGAAGCCAAATACCTCTGTTATTGATGTGAATGAGATGACCTCTGTTGATGCTGTGAAGGCAACTACCTCTGTTGTGTTTACTCAACAATCTGCTTCTGCTGTCAATCCACTGAACTCTGCTTCCGGTGAGGATGTGAGCGTGAAATCTTCAGCCTCTGGCAGGCCATGTGGACAGCGCAAGAAATCCTTTGCAAAGAGAGTGTCCCCTCAACATGAAGATCAAGATGTTGAAGATGACAATGCTCCTATCAAGTTATTGAAGAGGGCTGTGAAGATTGAGAAGATCCCCTAA 1959 0.389 MALTVDNRNMFSNIDEINSDRSTWNLKAKIIRLWQVSDFNRPNVPFSVEMVLMDSDGAKIHATIKKTLIYKFKHDLIEGKVYSFENLGVASNNGGYRTTHHPYKLNFQFGSFVQRLSNCDIVKSPFTFVPIAEVVGGLYDTDFLVDVIGFLTEIGQEREITNQNGSTTKLNVISLEADGHKLQCTLFGPYVDELNTFVGAGDLNNAVVIVQLAKAKTFQDKIHIQNCMNCSVLLFNPNCEESQSFRARCVGSDENPSPLTFTQLSNEPTVTPLDEFLYNTPKATLQDLKDATKESSHVVSATVKRILNPDSYWYTSCFCSKGVIPDSRLWFCEKCNRHVPKVVPRFCVKLRVMDHTDSATLVVFDKEASGIFNMSCADMLQLGDADNDGEGIVPPRIDDSLVNQTWLFKVETKPSQNPRFEQSFRVRKICTDDGIIKQFKDKWDSEDAVRTKKRNEGGSLSTLLDKGKDVYVGGTSNVLSQECQNFSGDSEKGKGLIVDGTPVEVSQDLMLKFSESVVNLDDDSVNTSFSVKSMTYGNKQLTYVAAVNPTTSALAVKPNTSVIDVNEMTSVDAVKATTSVVFTQQSASAVNPLNSASGEDVSVKSSASGRPCGQRKKSFAKRVSPQHEDQDVEDDNAPIKLLKRAVKIEKIP* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2616 652 Gene3D - 119 255 IPR012340 -
Tpr4g2616 652 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 380 - -
Tpr4g2616 652 MobiDBLite consensus disorder prediction 621 636 - -
Tpr4g2616 652 Gene3D - 277 432 IPR012340 -
Tpr4g2616 652 CDD RPA1_DBD_B_like 146 249 - -
Tpr4g2616 652 Pfam Domain of unknown function DUF223 49 143 IPR003871 -
Tpr4g2616 652 SUPERFAMILY Nucleic acid-binding proteins 126 247 IPR012340 -
Tpr4g2616 652 CDD RPA1_DBD_A_like 26 113 - -
Tpr4g2616 652 CDD RPA1_DBD_C 282 413 IPR013955 -
Tpr4g2616 652 Pfam Replication factor-A C terminal domain 299 413 IPR013955 -
Tpr4g2616 652 MobiDBLite consensus disorder prediction 592 612 - -
Tpr4g2616 652 Gene3D - 9 115 IPR012340 -
Tpr4g2616 652 SUPERFAMILY Nucleic acid-binding proteins 11 118 IPR012340 -
Tpr4g2616 652 SUPERFAMILY Nucleic acid-binding proteins 284 429 IPR012340 -
Tpr4g2616 652 PANTHER REPLICATION FACTOR A 1, RFA1 22 380 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr4g2616 652 MobiDBLite consensus disorder prediction 592 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2616 Tpr-Chr4 28786129 28789246 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2616 14 376 Core DNA Replication Machinery Family AT2G06510 22.105 8.36e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2616 - - mtr:MTR_4g036240 598.586