Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2596 ATGGCACCGAAACAAAGGACCGCTAGAGTTAGCCGTAACCCTGAATTGATTAGAGGTATCGGAAAATACTCTAGGTCTACCATGTACCACAAGAGAGGTCTCTGGGCTATTAAGGCCAAACATGGCGGCTCTTTCCCTCGCCATGACCCCGTCGCTAAACCTGAAACTCCCGTCGAGAAGCCTCCCAAATTCTACCCTGCCGATGATGTTAAGAAGCCCCTCCGTAACAAGCACAAACCAAAACCTACTAAGCTAAGGGTTAGCATTACTCCAGGCACAGTGTTGATTATTCTTGCTGGAAGATTTAAGGGGAAGAGAGTTGTGTTTCTTAAGCAGCTTCCTTCTGGACTTCTTCTAGTAACCGGTCCATTCAAGATTAACGGAGTCCCTTTGAGGCGTGTGAATCAGGCTTATGTTATTGGAACATCAACCAAAGTAGACATTTCTTCAGTTAATGTTGATAAGTTTGATGACAAGTACTTTTCAAAGGAGTCCCCAAAAAAGACAAAGAAGGGAGAGGGAGAGTTCTTTGAGGCAGATAAGGAGGATAAAAAGGTTCTCCCCCAGGAAAAGAAGGATGATCAGAAGACTGTCGATGCTGGTTTGTTAAAAGCCATCGAGAGTGTTCCGGACTTGAAGACTTACCTAGGTGCGAGGTTTTCCTTGAAGGCTGGTGTGAAGCCTCATGAGTTACTCTTCTAG 702 0.453 MAPKQRTARVSRNPELIRGIGKYSRSTMYHKRGLWAIKAKHGGSFPRHDPVAKPETPVEKPPKFYPADDVKKPLRNKHKPKPTKLRVSITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISSVNVDKFDDKYFSKESPKKTKKGEGEFFEADKEDKKVLPQEKKDDQKTVDAGLLKAIESVPDLKTYLGARFSLKAGVKPHELLF* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2596 233 Gene3D - 87 170 IPR014722 -
Tpr4g2596 233 SUPERFAMILY Translation proteins SH3-like domain 88 176 IPR008991 -
Tpr4g2596 233 CDD KOW_RPL6 81 233 IPR041997 -
Tpr4g2596 233 PANTHER 60S RIBOSOMAL PROTEIN L6 1 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Tpr4g2596 233 PANTHER 60S RIBOSOMAL PROTEIN L6 1 233 - -
Tpr4g2596 233 Pfam Ribosomal protein L6e 126 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Tpr4g2596 233 MobiDBLite consensus disorder prediction 45 73 - -
Tpr4g2596 233 Pfam Ribosomal protein L6, N-terminal domain 3 61 IPR005568 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2596 Tpr-Chr4 28551582 28553458 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2596 1 233 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 80.258 1.95e-121 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2596 K02934 - gmx:100785356 404.831