Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2594 ATGGCAACTTTGGATGGTAATTCAGACCAATATGCTAATGTTTCTTCTAATTCACCATCATTATCATCATCATCATCTTCTTCGTCGTCGTCGTTTGGAGGGGTTAATAGTGATGATAATAATGGTAGTGTAACTTGGTACGGAATGAGGTTACCTTCTGTTAATCCCTTTTTGTCACCACTTTCGTTTTTATTGGATTATTCTGGAATTCTCCGATCAAACAATGATTCTGAGGTTATGATTGTCAACAATGGAGTTTCTGGTTCGGAAATACGGCCTCGGGTTGATTCCGCTGCGGCTGTTGGTGAGAGCAGTGCAGGTGAAGTTGCGATAAGGATAATTGGAGCTGGAGAGCATATTCAGAATCAGGTTGGAGAAGTGGGTTATGATGATTGTGGTGAGGATCTGGTTGGTGAGAGAAGTGGAATTCCTGCATTGGATGATGGTGAAGCCGAGGGACGTGGTGGAATTGAGACTAGTGAGGGGGTTCCCCTTGTGTCTTCGCCTTCATCGTCGTCATTGGCTGGTAGTGGACAGGTTGATGGTGATACTTCTGGGAATGGAACAGAAAATAACAGCAGGGATTCGTCTTCTTATCAGAGATATGATATTCAGCTGGTTGCTAAGTGGATTGAGCAGATTCTTCCTTTTTCGCTATTGTTATTGGTTGTTTTCATCCGACAGCATTTGCAAGGTTTCTTTGTCACAATTTGGATAGCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAACAGACAGCTTTGAAGGGAGATAGGAAAGTCTCTTTGCTTGCTGGTATATCTATTGCTTTCATTCTTCACGTGATATGCATTTACTGGTGGTATCGAAATGATGATATTTTATATCCACTGGTCATGTTACCTCCAAGTCCAACACCTTTCTGGCATGCAATATTCACCATCTTGGTCAATGATATATTAATGCGGCAAGTTGCAATGGCTTTTAAGTGTATCCTACTTATATATTACAAAAAGGGGAAAGGTCATAACTTTCGTCGACAGGCTCAAATGTTAACTCTTGTTGAGTACACGCTGCTTTTGTATCGTGCCTTGTTGCCAACACCAGTTTGGTACCGGTTTTTCTTGAATAGGGAATATGGCAGTCTCTTTTCGTCACTGACCACAGGATTGTATTTAACTTTCAAGCTAACATCCGTTGTTGAGAAGGTCCAATGCTTCATTTCGGCCGTGAAAGCGTTATCAAGAAAGGAAGTTCATTATGGGGTCTATGCCACAGCGGAACAGGTAACAGCTGCTGGTGACCTATGTGCTATATGCCAGGAGAAGATGCATTCCCCAATCTTGCTACGTTGTAAACACATTTTCTGCGAAGATTGCGTATCTGAGTGGTTTGAGAGAGAAAGGACTTGCCCTCTATGCAGAGCATTGGTTAAAGCAGCTGATCTTCGGACCTTTGGAGATGGATCAACAAGTTTGTTTTTCCAGTTGTTTTAA 1479 0.4192 MATLDGNSDQYANVSSNSPSLSSSSSSSSSSFGGVNSDDNNGSVTWYGMRLPSVNPFLSPLSFLLDYSGILRSNNDSEVMIVNNGVSGSEIRPRVDSAAAVGESSAGEVAIRIIGAGEHIQNQVGEVGYDDCGEDLVGERSGIPALDDGEAEGRGGIETSEGVPLVSSPSSSSLAGSGQVDGDTSGNGTENNSRDSSSYQRYDIQLVAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWIAAVMFKSNEIVKKQTALKGDRKVSLLAGISIAFILHVICIYWWYRNDDILYPLVMLPPSPTPFWHAIFTILVNDILMRQVAMAFKCILLIYYKKGKGHNFRRQAQMLTLVEYTLLLYRALLPTPVWYRFFLNREYGSLFSSLTTGLYLTFKLTSVVEKVQCFISAVKALSRKEVHYGVYATAEQVTAAGDLCAICQEKMHSPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRTFGDGSTSLFFQLF* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2594 492 MobiDBLite consensus disorder prediction 1 35 - -
Tpr4g2594 492 CDD RING-HC_RNFT1_like 430 469 - -
Tpr4g2594 492 Pfam Zinc finger, C3HC4 type (RING finger) 429 473 - -
Tpr4g2594 492 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 16 492 IPR044235 GO:0061630|GO:1904294
Tpr4g2594 492 MobiDBLite consensus disorder prediction 160 196 - -
Tpr4g2594 492 MobiDBLite consensus disorder prediction 163 196 - -
Tpr4g2594 492 ProSiteProfiles Zinc finger RING-type profile. 431 469 IPR001841 -
Tpr4g2594 492 SMART ring_2 431 468 IPR001841 -
Tpr4g2594 492 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 406 479 IPR013083 -
Tpr4g2594 492 ProSitePatterns Zinc finger RING-type signature. 446 455 IPR017907 -
Tpr4g2594 492 SUPERFAMILY RING/U-box 424 473 - -
Tpr4g2594 492 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 16 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2594 Tpr-Chr4 28510859 28520605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2594 51 492 C3H Transcription Factor Family AT5G01960 61.521 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2594 - K22379 csin:114257123 582.793