Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2576 ATGGGCAGGCGAAAAAGTAAACCGCATCGATCAGTTGGGATACTAGTCGAAGCAAATGCTACTGCTGAAGCAGAACCAGATAAACATAATGCTATTGCAGTAGGAGAAGAAGAAAAGTGTGATTTTGATAAACCTTATTTTGTTGAGGTTGACCGGTCTGGTTGGTTGTCAGATGAACACCTTGATATTTCTGAAGTTGTTTTAACGGATTTAAATTTAAGAGAAGGTTTTAATGGTTTTGAACTGTCTGAGGATTTTTATCAGGATCCCCAATTCTCGTTAAGATTTCGGTTGTGTAATGTCAGTGATATTCTTGGTCGAATCAAACTTGGCCATTGGCCTGTGTTACCTTATACTGATATTCATCTTGAGTTTGTTAAAAGAGCTACAGTTGACAATAACGAAACATGCACAGTGTTGTTATCTGGTATTTTTGATGGACCTGATGAAGGTGTTTCTGGTCTTGTTCACTTGATGAGTTTGAAATTTGTTACATTGAGGGCTGTTATTGGGATTAGGCTTTCTGAGGACACTCCTTCCCTCAGGATTAGGGTTGAGGTACTAAAGAGTGCCTTCGATGCATGTGAGTCACTTCTTGAGGTTTCTAGACAACTATGGAAAAAGAGTATGATGAATGTCATGTCTTGGTTACGACCAGAAATAATGACTTCAGAAGTTAGGTATGGGTTTAGTAGCTACATGGACATGGACATGGACATGGAAGTTAATTCTCAGAATGAAATGGCAGACGGCGGTGGCTATGCAGGGAAATGCTCGAGGTTTGATCCTGCTGGTTTTTATGAAGCCATTAAGCCTTCAAAAGCAGAGCCAATGCTTGAAGATGATATACCTGAGTTACTTCCTGAACTTCGGCCATATCAACGGCGTGCAGTTTTCTGGATGGTAAAACGGGAAAAAGTAATGGAAGAAAGTCAGAGTGAGAGTGAAAGAAATCTGTTTCATTCTCCACTATGTGTGCCGGTGGATTTTCTGGACACAAGGACTAAAATGTTTTTCAATCCATTCAGTGGAAATATTTCCTTGTGCCCAGAGACTTCTTCACCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGTAAAACTGTAGAATTGCTTGCTTGCATCTTTGCTCACCGTAAATCAGCATACAAAAGTGACATACCAGTGGATTCAGTTCCCCAAGTCAATGGAGACGAAAAAGTCGCTTTAAAAAGACTAAAAAGAGAGCGTGTGGAGTGCATATGCGGAGCTGTGAGCGAAAGTCTCAAATATCAAGGACTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCAGATTGTGTTGGTTATTCACCTAAAGGAAAGCCACTGAAATCAAAACAAGGATTGGAAAGCAAGGCATATAAAACTACCATAGCTGTGAGGAATGGGGAATATGTATGTCAGATGTGCTCTGAACTAATACAGGCTACTGAAACTCCTATTGCCTCCGGTGCCACTCTCATTGTCTGCCCAGCTCCTATTTTGCCCCAGTGGCATGATGAAATTATACGTCATACACGTCCAGGAGCCTTGAAAACTTGTATTTATGATGGTGTTCGTGAAACATCTTTCTCCAATAAACCTCTGATGGATGTCAGTGATCTTGCGAGTGCAGACATTGTACTAACTACATATGATGTGCTTAAAGAGGATTTGTCCCATGATTCTGATAGACATATAGGCGACCGACACCTTTTAAGATTTCAGAAAAGGTACCCAGTTATCCCAACTCTTCTTACCAGAATATACTGGTGGAGGATTTGTTTGGATGAGGCTCAAATGGTGGAGAGTACTGTTGCTACTGCTGCTACTGAAATGGCTCTAAGACTCCATTGCAAGCATCGTTGGTGCGTTTCAGGGACCCCAATTCAGCGAAAGCTTGATGACTTATTTGGACTTCTAAGATTCATTAAAACCAGTCCCTTCAATTTATACAGATGGTGGAGTGAAGTTATTCGAGATCCTTATGAGAAGGGAGATATGGGAGCTATGGAATTTACACACAGGATTTTCAAACAAATCATGTGGCGTTCTTCTAAACAACATGTTGTTGATGAATTGGACCTTCCCTCCCAACAGGAGTGCCTGTCTTTGCTTACACTATCACCAGTAGAAGAGCACTTTTACCAGCGGCAACATGAAGCTTGTGTTAGAGATTCCCATGACATTATTGAAAGTTTGAGAAATGATATTCTTAATAGAAAAGTCCCAGATTCTGTCTCTATGAGTGGTTCCTCTGATCCTTTAATCACTCACACCGAGGCAGGGAAGCTATTGAATGCTTTGCTGAAGCTTCGTCAGGCTTGTTGTCACCCCCAGGTTGGAAGTTCTGGGTTGCGTTCCATACAGCAGTCACCTATGACAATAGAAGAAGTACTAATGGTCCTTATAAGCAAGACCAAGATAGAAGGTGAGGAAGCTCTCAGGAGGTTAGCTATTGCTCTGAATGCGCTTGCAGCAATATTTATAATACAAAAAGATTATTATCAAGCTGCTTTGCTGTACAATGAAGCTCTTGCTATGGCTGAAGAGCATTCTGAAGATTTCCGCCTGGATCCTTTGTTAAATATACACATTCATCATAATCTCGCTGACATATTCCCCCTGGCTCAGAATTTTGCTTTGATCTTGCCATCCAAAGGAAAACAATTTTCTGCAACTTCTGCAGTCAATACAACTAAAAAGCATTTTATTGTAAAGGTTGATCATGATCAAGTGAAGAGGCATAAAATAAGTAGTTTTGATGACGCAATTTCAACAGTGGCTTCTGCGGAACCATCAAATGTTGCATCTAGCCTTTCAGAAAATGACTTAAATGATAGGGAATGTGATGCTTTGTCGGCAAGTTCCGTCAAATATCTGATAGCTGAATGTGAAGATTCAAAACAGAAATACTTGTCTGTGTTCAGTTCAAAACTAGCTGCAGCTCAGCAGGAGTTTCAAAGTTCTTACACGCAGGTTTGTGAAGCATATCATGACTCCGGAACAAATCAAACTACATTTTGGTGGTTAGAAGCACTTCATTATGCTGAGCAGAACAAGGATTTCTCAACCGAGTTGATTAGGAAGATTGAAGAAGCCCTCTCAGGAAATTCAAACAATTCAAAGTCGTCACGAATACCTGCTCGTTTTCGGAGCATAAGCTCTCTGAAGTATCAAATTCAAACCAATTTGGATCAATTAGAAGCCTCTAGGAAAGTGTTATTAGATCGTCTGCTTGAAATTGACAAGACAATGGAAAAACCAAAAGATGAAGATATTGAGCGCGTTGGTAAATGTCGAAATTGCCAACCTAATTGTGATGGCCCCCCATGCATTCTGTGTGAACTAGATGAGTTGTTTCAGGCCTATGAAGCTAGACTCTTTGTTCTCAAGAATGAACGTGGTGGGATAATATCATCTGCTGAGGAGGCAGTAGATTTTCAAAAGCAAAATTTTGCATTGAATCAATTCCTCTCAAAGCTATCACAGTCTAATCACAGTTCATCAGTGTCTGATATTGAACATGAAGAGTCCAGAAAAAGGAATGTTGGACAAAAAGTTGTGACTTCAAAATCACCATCAATGCTGGAGGTTCTTCTTGGAGTCATAAAAAACTATTGCAAGACTCAATTTGGAAAGGACAGTGTCTCAGCAGCCACCAAGCATTTACATATTTTTGAGGGAATGCGAAAGGAGTATGGCTATGCAAGGTCTTTGGCATTAGCTCAAGCTCAATATCTGCGTGCCCATGATGAAATAAAGATGGCGATTTCTCGTTTACACCTAAAGACAAATGAAGATGATGAATCTCTTGATGCTTTAGGTGAAAACGAATTAACTGCGGCTAGCTCAAACTTTTCCCAGGAGAAGTTTATGTCACTGGCCTTGTTGTCACAGATAAAAGGAAAACTACGGTACTTAAAGGGTTTGGTTCAATCTAAGCAAAAACTACCATTGGAAAGTCAAGATAGCTCTTTATGCACTCAAGATACAAATGCTATGTCAAACTCTATGGAAGAGAAGGGTGAACTCATACCTAAAACTTATGAGGAAACATGCCCAATTTGCCAAGAAAAGCTAGGCCATCAGAGAATGGTGTTTCAATGTGGGCATATTACTTGCTGTAAATGTTTATTTGCTATGAGTGAGCAAAGACTTCAACATAGCAAGACTCATAATTGGGTGATGTGCCCTACATGTCGACAGCCTACCGATTTTGGAAACATTGCCTATGCTGTTGATGCAGAAAAAGAATCTCCCAATTCTTCAATGCCGCATACAATTGACTGCTGTGAAAAACATGAAGCATCTATTACTGTTAAAGGCTCGTATGGAACCAAGATTGAAGCAATCACAAGAAGAATCTTGTGGATAAAGGCCACAGATCATAAATCAAAAGTTCTTGTATTTTCAAGTTGGAATGACGTACTTGATGTATTGGAACATGCGTTTGCCGCCAATAACATCACCTTCATCCGGATGAAGGGAGGCAGGAAAGCACACATTTCCATCAGTCAATTTAGAAGAAAACAGAATGGCACAAAAGGATGTGAGGGATCAGAACCAAAATCTATTCAGGTGTTATTGCTTTTAATCCAACATGGAGCCAATGGACTCAATCTTTTGGAAGCACAACATGTGGTCCTTGTAGAGCCATTACTCAATCCAGCTGCCGAAGCACAAGCAATCAGTCGTGTACATCGCATTGGCCAAAAAAATAAGACCCTCATTCATCGTTTCATAGTAAAAGACACGGTTGAAGAGAGCATATATAAATTGAACAGAAGCAGAAGCAAAAGTAATCATTCATTCATTAATGGCAACACAAAAAATCAAGATCAACCTGTTTTGACCCTTAAAGATGTTGAATCCTTGTTGGCAAGAGCACCATTAACGGCGCCGGAAATCGATGAAAACCCTACTACAAATACGAACCTGAGAGACTTGCCACCATCAGTTGCTGCAGCTATAGCAGCCGAGAGAAGACATAATGAGCAAAGAACATGA 5025 0.4036 MGRRKSKPHRSVGILVEANATAEAEPDKHNAIAVGEEEKCDFDKPYFVEVDRSGWLSDEHLDISEVVLTDLNLREGFNGFELSEDFYQDPQFSLRFRLCNVSDILGRIKLGHWPVLPYTDIHLEFVKRATVDNNETCTVLLSGIFDGPDEGVSGLVHLMSLKFVTLRAVIGIRLSEDTPSLRIRVEVLKSAFDACESLLEVSRQLWKKSMMNVMSWLRPEIMTSEVRYGFSSYMDMDMDMEVNSQNEMADGGGYAGKCSRFDPAGFYEAIKPSKAEPMLEDDIPELLPELRPYQRRAVFWMVKREKVMEESQSESERNLFHSPLCVPVDFLDTRTKMFFNPFSGNISLCPETSSPYVFGGILADEMGLGKTVELLACIFAHRKSAYKSDIPVDSVPQVNGDEKVALKRLKRERVECICGAVSESLKYQGLWVQCDICDAWQHADCVGYSPKGKPLKSKQGLESKAYKTTIAVRNGEYVCQMCSELIQATETPIASGATLIVCPAPILPQWHDEIIRHTRPGALKTCIYDGVRETSFSNKPLMDVSDLASADIVLTTYDVLKEDLSHDSDRHIGDRHLLRFQKRYPVIPTLLTRIYWWRICLDEAQMVESTVATAATEMALRLHCKHRWCVSGTPIQRKLDDLFGLLRFIKTSPFNLYRWWSEVIRDPYEKGDMGAMEFTHRIFKQIMWRSSKQHVVDELDLPSQQECLSLLTLSPVEEHFYQRQHEACVRDSHDIIESLRNDILNRKVPDSVSMSGSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSIQQSPMTIEEVLMVLISKTKIEGEEALRRLAIALNALAAIFIIQKDYYQAALLYNEALAMAEEHSEDFRLDPLLNIHIHHNLADIFPLAQNFALILPSKGKQFSATSAVNTTKKHFIVKVDHDQVKRHKISSFDDAISTVASAEPSNVASSLSENDLNDRECDALSASSVKYLIAECEDSKQKYLSVFSSKLAAAQQEFQSSYTQVCEAYHDSGTNQTTFWWLEALHYAEQNKDFSTELIRKIEEALSGNSNNSKSSRIPARFRSISSLKYQIQTNLDQLEASRKVLLDRLLEIDKTMEKPKDEDIERVGKCRNCQPNCDGPPCILCELDELFQAYEARLFVLKNERGGIISSAEEAVDFQKQNFALNQFLSKLSQSNHSSSVSDIEHEESRKRNVGQKVVTSKSPSMLEVLLGVIKNYCKTQFGKDSVSAATKHLHIFEGMRKEYGYARSLALAQAQYLRAHDEIKMAISRLHLKTNEDDESLDALGENELTAASSNFSQEKFMSLALLSQIKGKLRYLKGLVQSKQKLPLESQDSSLCTQDTNAMSNSMEEKGELIPKTYEETCPICQEKLGHQRMVFQCGHITCCKCLFAMSEQRLQHSKTHNWVMCPTCRQPTDFGNIAYAVDAEKESPNSSMPHTIDCCEKHEASITVKGSYGTKIEAITRRILWIKATDHKSKVLVFSSWNDVLDVLEHAFAANNITFIRMKGGRKAHISISQFRRKQNGTKGCEGSEPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEESIYKLNRSRSKSNHSFINGNTKNQDQPVLTLKDVESLLARAPLTAPEIDENPTTNTNLRDLPPSVAAAIAAERRHNEQRT* 1675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2576 1674 Pfam SNF2-related domain 293 786 IPR000330 GO:0005524|GO:0140658
Tpr4g2576 1674 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 595 1615 IPR027417 -
Tpr4g2576 1674 SUPERFAMILY FYVE/PHD zinc finger 412 485 IPR011011 -
Tpr4g2576 1674 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 689 IPR027417 -
Tpr4g2576 1674 Pfam Helicase conserved C-terminal domain 1453 1576 IPR001650 -
Tpr4g2576 1674 SMART PHD_3 415 483 IPR001965 -
Tpr4g2576 1674 ProSiteProfiles Zinc finger RING-type profile. 1359 1407 IPR001841 -
Tpr4g2576 1674 SMART ring_2 1359 1406 IPR001841 -
Tpr4g2576 1674 SMART ultradead3 286 659 IPR014001 -
Tpr4g2576 1674 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 402 482 IPR013083 -
Tpr4g2576 1674 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1456 1629 IPR001650 -
Tpr4g2576 1674 ProSitePatterns Zinc finger PHD-type signature. 416 482 IPR019786 -
Tpr4g2576 1674 Gene3D - 483 711 IPR038718 -
Tpr4g2576 1674 Gene3D - 353 396 IPR038718 -
Tpr4g2576 1674 SUPERFAMILY RING/U-box 1352 1412 - -
Tpr4g2576 1674 CDD PHD_TCF19_like 417 482 - -
Tpr4g2576 1674 SMART helicmild6 1484 1576 IPR001650 -
Tpr4g2576 1674 Gene3D - 1410 1655 IPR027417 -
Tpr4g2576 1674 CDD DEXQc_SHPRH 290 690 - -
Tpr4g2576 1674 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 1647 - -
Tpr4g2576 1674 CDD SF2_C_SNF 1450 1587 - -
Tpr4g2576 1674 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1331 1409 IPR013083 -
Tpr4g2576 1674 Pfam PHD-finger 416 484 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2576 Tpr-Chr4 28287986 28309192 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2576 286 784 RAD5 or RAD16-like Gene Family AT5G22750 26.547 1.17e-40 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr4g2576 SNF2_N 1.2e-85 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2576 K15710 - gmx:100776659 2696.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2576 4 28287986 28309192 Tpr4g2576 4 28287986 28309192 ECH