Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2572 ATGAAGTTGCTTTTACTACCAATGATGTTCCCTCTAATACTGTTGATTTGTTTGTTTTATGTTGGTAAAGCAATAGATTGTGGTGGCAATCGAATTGCAAATACTATTGTTGTTAACCAACGAGGTCAAGGAGCATTTCAAACAATTCAAGCAGCCATTGATTCTATAAAGCGCCAAAATAATCAATGGATTTTGCTTCAAATAAATCCTGGCATATATAAGGAAAAAGTTCATATTCCTATTGAAAAGCCATGCATTATTTTAAAAGGATCGGGTAGCAAAACAACCATTATTGCTTACAATGATTCGGCTAATAATGTTGGCACATCTGATAGCGCTACATTCATTTCATCTCCACCTAACGTGATTGTGAGTGGAATTTCATTCAAGAATACACATGGACCTAACGGACCTGCAGTAGCAGCTAATTTTTATGGTGATAAATCAGCCATATTTGAATGTAGTTTCTTTGGTTACCAAGATACATTGCTCCTATCATCTGGACGCTCTTACTTTAAAAATTGCTTTATTCAAGGTGAAGTGGACTTTATTTTTGGTTCGGGTCAATCTTATTTTGAGAATTGTGTCATTAATGCTGTACAAGGGAAATCCAGACCAATAGGTTTTGTTACAGCACAACTTAGAGAAAAACCAAATGATCCAAACGGATTTGTTTTTAAAGGAGGGTCTATTATTGGAATTGGTCGAGTGAATCTTGGAAGGCCCTGGGCCCCTTACTCAAGAGTCATATTTTTGGAAACATATTTTTCATCCGTGGTAACTCCTGGAGGATGGGATCTTTGGCATGTGAGAAGAGACCAAGAGCAAAATATCGTCTTTGCAGAAGTTAATTGTAAAGGACCAGGGGCCAATACTAAGAACCGTGTCAACTGGGAAAAAAAGCCAAATGAAATAAACTTAAATGAATATACTTTATCATCTTTTATCAATAATGATGGATGGCTTGCCAATATACCATCAATATAA 987 0.3597 MKLLLLPMMFPLILLICLFYVGKAIDCGGNRIANTIVVNQRGQGAFQTIQAAIDSIKRQNNQWILLQINPGIYKEKVHIPIEKPCIILKGSGSKTTIIAYNDSANNVGTSDSATFISSPPNVIVSGISFKNTHGPNGPAVAANFYGDKSAIFECSFFGYQDTLLLSSGRSYFKNCFIQGEVDFIFGSGQSYFENCVINAVQGKSRPIGFVTAQLREKPNDPNGFVFKGGSIIGIGRVNLGRPWAPYSRVIFLETYFSSVVTPGGWDLWHVRRDQEQNIVFAEVNCKGPGANTKNRVNWEKKPNEINLNEYTLSSFINNDGWLANIPSI* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2572 328 PANTHER PECTINESTERASE 2 328 - -
Tpr4g2572 328 Pfam Pectinesterase 36 318 IPR000070 GO:0030599|GO:0042545
Tpr4g2572 328 Gene3D - 29 327 IPR012334 -
Tpr4g2572 328 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 2 328 - -
Tpr4g2572 328 SUPERFAMILY Pectin lyase-like 32 323 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2572 Tpr-Chr4 28253945 28256297 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2572 13 271 Carbohydrate Esterase AT2G19150 45.896 3.52e-71 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2572 - - mtr:MTR_5g088290 407.142