Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2560 ATGTCTCTACCAAGGCTAGGAATTATAGGTGATAAGGAAGATGAAAACAATCTTACTTTGTTGGAAAAAAGTTTGTGTTTGAATGTTTCAAAACCAAAAGAGTTCAACTACATGGGATTATCATCATCATCATCATCTAATTGTTCATCAGTGGATAGTCCAGTTCCAAAAATTCAATCTTTTTCTGATGAGACTAAAAGTAATTTGAATCTTAAAGCTACTGAGCTTAGGTTGGGACTTCCAGGATCACTGTCACCTGAAAGAGATTCATCAGATCTTTTTTTGAGAAGTTCAAATCAGTTTGATGAAAAGCCTCTTTTTCCTTTGCATCCTCAAAAAGATGATCATCTTTTTGAATCAAAGGCTGCTGTTTTAGGTAACAAAAGAGGGTTTTCTGATGCCATGGATGTTTTCTCAGAGGGGAAATTGAAGCCTAGCTCCAAATTGCTAGAGAGTGTTGCGGCGCAGAAAGCAAAAGCCGATGAAATAGTAACAGTTAAGGTTGGTCTTGAGAGGCCTCATGGTGTCGGTGAAAGCAGACCAAGTCTTAATGGTTCTGTACATAATGGAAATAGCATTGCACCAGCTTCCAACAGGGCACAGGTTGTTGGTTGGCCTCCAATAAGATCATTTAGGAAAAATTCACTGACAACTGCTTCAAAGAACACCGAAGAGGTTGATGGAAAATTGGGATCAGGAGGTGCCGTGTTTGTGAAGGTCAGCATGGATGGTGCTCCTTATTTGAGAAAAGTAGACTTGAAGAATTACGCCGCATATTCACAACTATCATCTGCTCTTGAGAAGATGTTCAGCTGTTTCACCATAGGTCAATGTGAATCTCATGGAAATCAGATGCTGAATGAAACCAAGTTGAGGGATCTTCTTCATGGGTCAGAATATGTTATTACTTATGAGGATAAAGATGGTGATTGGATGCTTGTGGGTGATGTTCCTTGGGAGATGTTTATTGATACATGCAAAAGACTAAGAATCATGAAGAGCTCCGATGCCATTGGTCTAGCCCCTAGAGCAGTTGAAAAAAGTAAAAGCAGGAACTAA 1059 0.3938 MSLPRLGIIGDKEDENNLTLLEKSLCLNVSKPKEFNYMGLSSSSSSNCSSVDSPVPKIQSFSDETKSNLNLKATELRLGLPGSLSPERDSSDLFLRSSNQFDEKPLFPLHPQKDDHLFESKAAVLGNKRGFSDAMDVFSEGKLKPSSKLLESVAAQKAKADEIVTVKVGLERPHGVGESRPSLNGSVHNGNSIAPASNRAQVVGWPPIRSFRKNSLTTASKNTEEVDGKLGSGGAVFVKVSMDGAPYLRKVDLKNYAAYSQLSSALEKMFSCFTIGQCESHGNQMLNETKLRDLLHGSEYVITYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSSDAIGLAPRAVEKSKSRN* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2560 352 Gene3D - 231 346 - -
Tpr4g2560 352 Pfam AUX/IAA family 74 343 IPR033389 -
Tpr4g2560 352 ProSiteProfiles PB1 domain profile. 235 334 IPR000270 GO:0005515
Tpr4g2560 352 PANTHER AUXIN-INDUCED PROTEIN 20 346 - -
Tpr4g2560 352 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 20 346 IPR003311 GO:0005634|GO:0006355
Tpr4g2560 352 SUPERFAMILY CAD & PB1 domains 231 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2560 Tpr-Chr4 27970139 27973887 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2560 219 342 B3 DNA Binding Superfamily AT4G23980 29.839 3.64e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tpr4g2560 AUX_IAA 1e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2560 K14484 - gmx:100815447 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2560 4 27970139 27973887 Tpr4g2560 4 27970139 27973887 ECH