Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2550 ATGGGGAGAGGAAAGATCCAGATAAGGAGGATTGATAATTCAACGAGCAGGCAAGTTACGTTTTCTAAGCGAAGGAATGGTTTGTTGAAGAAGGCAAAGGAACTTGCGATTTTGTGCGATGCTGAAGTTGGAGTTGTAATCTTCTCTAGCACTGCAAAACTCTACGATTTCGCGAGTACCAGCATGAGATCAGTAATTGATCGATACATCAAATCAAAAGAAGAACATAATCAACTTGGGAGTTCATCCTCTGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTGAGACAACAATTGCATAATTTGCAAGAAAGTCACCGGCAAATAATGGGCGGGGAATTATCAGGTTTGACAGTCAAAGAATTACAGAGTTTAGAGAACCAATTGGAAATCAGCCTCCGTGGTGTTCGTGTGAAAAAGGAGCAACTTTTTATGGATGAAATACAAGAACTAAATCGAAAGGGAGACATCATACACCAAGAAAATGTGGAACTATATAGGAAGGTCTATGGAACAAAAGATAAGAATGGAACAAACAGAAATTTTGTTCTCACAGATGGTCTAGGCATAGGAGAAGGAGACGATTCCGACGTGCCTGTGAATCTCCAGCTCAGCCAGCCACAGCAACAACACTACAAAGCACCCTCAGGAACTACAAAACATGGCAGACTACAATTGCATTGA 687 0.4105 MGRGKIQIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVVIFSSTAKLYDFASTSMRSVIDRYIKSKEEHNQLGSSSSEIKFWQREAAMLRQQLHNLQESHRQIMGGELSGLTVKELQSLENQLEISLRGVRVKKEQLFMDEIQELNRKGDIIHQENVELYRKVYGTKDKNGTNRNFVLTDGLGIGEGDDSDVPVNLQLSQPQQQHYKAPSGTTKHGRLQLH* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2550 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr4g2550 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr4g2550 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr4g2550 228 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr4g2550 228 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Tpr4g2550 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr4g2550 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tpr4g2550 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tpr4g2550 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 227 - -
Tpr4g2550 228 MobiDBLite consensus disorder prediction 207 228 - -
Tpr4g2550 228 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Tpr4g2550 228 ProSiteProfiles K-box domain profile. 86 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr4g2550 228 Coils Coil 86 106 - -
Tpr4g2550 228 Gene3D - 13 108 IPR036879 GO:0003677|GO:0046983
Tpr4g2550 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr4g2550 228 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2550 Tpr-Chr4 27798415 27817601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2550 1 216 MADS-box Gene Family AT4G37940 62.963 2.44e-92 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr4g2550 K-box 4.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2550 K09264 - gmx:100812413 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2550 4 27798415 27817601 Tpr4g2550 4 27798415 27817601 ECH