Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2548 ATGTCCTCACAAGTAGTGCAGTTGCATGTCAAAAAAAATCATGTAGTTTTGGACAATGGTATACTACAAGTGTATTTATCAAATCCAGATGGATTTGTGACTAGAATACAATATAATGGCATTGATAATCTGCTTGAAGCTCTTAATGAAAAGAATAATCGAGGGTATTGGGATCTTGTTTGGAGTGAAGCAGGAAGCACCGGAACAACCGGAACATCCGAGCGGGTTGTGGGAACAAGTTTTAAGGTTATAATGGAAACAGAGGAACAAGTTGAAATCTCATTTACAAGAATATGGGATCAATCTCTAAAGGGAAAGCAATCAGCTCTAAATATAGACAAAAGGTATGTGATGCTAAGCAATTCGTCAGGATTCTACTCTTATGCTATCTTTGAGCACCTGAAGGAGTGGCCAGCTTTTAACATACCTCAAATAAGGATTGTTTATAAGCTTCGTAAAGACAAGTTTCATTACATGGCTGTGGCGGATGATAGACAGAGGTTGATGCCTCTACCTGATGATCGATTACCCGGAAGAGGAGAAGAACTTGTTCCTCCAGAAGCTGTTTTGCTTGTTAATCCAGTTGAACCAGAGTTCACAGGAGAGGTTGATGACAAGTACCAATACTCAAGTGAGAACATAAACCTTAAGGTTCATGGATGGATAAGTACAGAATCTGAAACAAATCCAGCAACAGGGTTTTGGGTAATCATACCCAGCAATGAGTTTCGATCAGGTGGCCTTGTTAAACAGAATCTCACCTCTCATGTTGGCCCCATCAGTCTTGCAATGTTTCTTAGTGCTCATTACGCAGGAGAGGATATAGTGCTTAAACTCCAGCCCAATGAGCCATGGAAGAAAGTTTTTGGGCCAACTTTTGTCTATCTTAACACCTTGTTGGATGGTAATGAGGATCCACTAGAGCTTTGGGAGGACGCCAAATACCAGATGAACAAGGAAGTACAAAGTTGGCCCTATGATTTTCCAGCTTCAGATGATTTTCAAAAGCCAAACCAACGTGGCAGCGTTTGTGGCACATTACTAGTTCGTGACAGGTGTGTAAGTGACGAGTGCATAATAGCTCAAGGTGCATACATAGGATTGGCACCACCAGGAGATGTTGGATCTTGGCAAAGAGAATGCAAGGGATACCAATTTTGGACCAAAGCAAACAAGGAAGGCTACTTTTTAATCAATAATATAAGGAGTGGAGATTACAATCTATATGCATGGGTTCCAGGTTTTATTGGAGAATATTGGAACAATGGAGTCCTCAAAATAACCTCAGGTTGTGAAATAAACCTTGGTGACATAATTTATGAGCCTCCAAGAGATGGTCCAACATTATGGGAGATTGGAATTCCTGATCGCTCTGCTGCTGAGTTCTATGTTCCAGATCCTAATCCAAAATTCATAAACAAGCTTTTTATTGACCATCCAGATAAGTTTAGGCAATTTGGCTTGTGGGAAAGATATGCAGAGTTATACCCAGATGAAGATTTGATTTATACCGTTGGTATTAGTGATTACACAAAAGATTGGTTTTATGCCCAGGTCACCAGGAAGAAATATGATGGCAGTTATCAAGGAACTACATGGCAAATTAAGTTCAACCTAGATGATGTGGAAGCAAATAGAATCTATAAATTGCGATTGGCTCTTGCAAGTGCAAATGTCTCTGAGTTACAAGTTAGAGTAAATGATTTGAAACAAGATCCTCCACTATTTACTACGGGTGTGATTGGAAAGGACAATGCAATAGCTAGACATGGAATTCATGGACTCTATTGGCTCTTCAACATTGATGTGTCAAGTATTTTGCTATCCCAAGGAGATAATACTATATTTTTAACACAAGCTATGGCTACTGGCCCCTTGGCTCTCTTTCAAGGAATAATGTATGACTATATTCGTTTAGAAGGCCCCAAATATGTTTCTTCCCATTAA 1947 0.3965 MSSQVVQLHVKKNHVVLDNGILQVYLSNPDGFVTRIQYNGIDNLLEALNEKNNRGYWDLVWSEAGSTGTTGTSERVVGTSFKVIMETEEQVEISFTRIWDQSLKGKQSALNIDKRYVMLSNSSGFYSYAIFEHLKEWPAFNIPQIRIVYKLRKDKFHYMAVADDRQRLMPLPDDRLPGRGEELVPPEAVLLVNPVEPEFTGEVDDKYQYSSENINLKVHGWISTESETNPATGFWVIIPSNEFRSGGLVKQNLTSHVGPISLAMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNTLLDGNEDPLELWEDAKYQMNKEVQSWPYDFPASDDFQKPNQRGSVCGTLLVRDRCVSDECIIAQGAYIGLAPPGDVGSWQRECKGYQFWTKANKEGYFLINNIRSGDYNLYAWVPGFIGEYWNNGVLKITSGCEINLGDIIYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKFINKLFIDHPDKFRQFGLWERYAELYPDEDLIYTVGISDYTKDWFYAQVTRKKYDGSYQGTTWQIKFNLDDVEANRIYKLRLALASANVSELQVRVNDLKQDPPLFTTGVIGKDNAIARHGIHGLYWLFNIDVSSILLSQGDNTIFLTQAMATGPLALFQGIMYDYIRLEGPKYVSSH* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2548 648 SUPERFAMILY Starch-binding domain-like 382 421 IPR013784 GO:0030246
Tpr4g2548 648 CDD RGL4_M 339 438 IPR029413 -
Tpr4g2548 648 Coils Coil 552 572 - -
Tpr4g2548 648 Pfam Polysaccharide lyase family 4, domain II 362 435 IPR029413 -
Tpr4g2548 648 PANTHER LG27/30-LIKE GENE 2 645 - -
Tpr4g2548 648 CDD RGL4_C 450 640 - -
Tpr4g2548 648 Gene3D - 6 278 IPR014718 GO:0030246
Tpr4g2548 648 CDD RGL4_N 8 298 - -
Tpr4g2548 648 SUPERFAMILY Galactose-binding domain-like 445 640 IPR008979 -
Tpr4g2548 648 Gene3D - 446 640 - -
Tpr4g2548 648 Pfam Rhamnogalacturonate lyase family 3 203 IPR010325 -
Tpr4g2548 648 Gene3D - 337 430 - -
Tpr4g2548 648 Pfam Polysaccharide lyase family 4, domain III 448 639 IPR029411 -
Tpr4g2548 648 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2548 Tpr-Chr4 27765225 27774797 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2548 1 642 Polysaccharide Lyase AT1G09890 64.798 0.0 868
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2548 K18195 - gmx:100815677 1134.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2548 4 27765225 27774797 Tpr4g2548 4 27765225 27774797 ECH