Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2536 ATGGAACCATCAATGTTCGGAAACTCTACGCCCTTGAACATCACCGGAGAAACTGAAGACGGTTCTGGTCCTGACTCCGCCATCGACGGTAACCATAACATTCATTTCGAAACTGTTGATGATGGAAGTGGCGGTTTTGTTGTTGAGGATGTTACCTCCGACGCCGTTTATGGCCACGGCGGTGGAAACTCTGAATTAGGTATTCAACGGTTTGAAGATTCTGATCAACTTACGCTTTCGTTTCGTGGTCAAGTTTATGTTTTCGATTCTGTTACTCCTGATAAGGTTCAGTCGGTTTTGTTACTGTTGGGTGGATGTGAACAACCTCAAGCGGATGCAACATATGTGGATCCGGTGTCTCAACAAAGTCAGAGGGAATCAATGGAATATCCAAAATGCAGTCAATCACATCGACAAGCCTCATTAAATAGGTTCCGGCAGAAGAGGAAAGAAAGATGCTTTGAGAAGAAAGTTAGATATGATGTACGTCAAGAAGTTGCACTCAGGATGCAGAGAAATAAGGGTCAATTTACTTCATCTAAGAAACAAGATGGAGCCAATGGTTGGGGTACAGACCAGGATTCTGGGCAGGATGACAGTCAAGCAGAAACCTCTTGCACACATTGTGGCACAAGTTCAAAATCAACTCCGATGATGCGGCGAGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGGCTTTATTGGGCAAATAGGGGTGCTTTGAGAGACCTTTCTAAGAGACATCATGAACTATCTATTGTACCAGCCGAGCAGGTTGATCAAGGTAATAGCTCAGACTGTGGAACAGCAACTATCCCTTCACGCAATAATCTTGCTGCTTTCTCTGAGAATAATAACCAAGCTTTGGTAGCTGATCGTTAA 888 0.4448 MEPSMFGNSTPLNITGETEDGSGPDSAIDGNHNIHFETVDDGSGGFVVEDVTSDAVYGHGGGNSELGIQRFEDSDQLTLSFRGQVYVFDSVTPDKVQSVLLLLGGCEQPQADATYVDPVSQQSQRESMEYPKCSQSHRQASLNRFRQKRKERCFEKKVRYDVRQEVALRMQRNKGQFTSSKKQDGANGWGTDQDSGQDDSQAETSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLYWANRGALRDLSKRHHELSIVPAEQVDQGNSSDCGTATIPSRNNLAAFSENNNQALVADR* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2536 295 CDD ZnF_GATA 205 249 IPR000679 GO:0006355|GO:0043565
Tpr4g2536 295 PANTHER GATA TRANSCRIPTION FACTOR 25 26 273 - -
Tpr4g2536 295 SMART tify_2 70 105 IPR010399 -
Tpr4g2536 295 SMART GATA_3 200 253 IPR000679 GO:0006355|GO:0043565
Tpr4g2536 295 MobiDBLite consensus disorder prediction 1 20 - -
Tpr4g2536 295 Pfam GATA zinc finger 206 241 IPR000679 GO:0006355|GO:0043565
Tpr4g2536 295 PANTHER GATA TRANSCRIPTION FACTOR 28 26 273 IPR045280 GO:0006355
Tpr4g2536 295 MobiDBLite consensus disorder prediction 172 223 - -
Tpr4g2536 295 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 254 - -
Tpr4g2536 295 Pfam CCT motif 138 180 IPR010402 GO:0005515
Tpr4g2536 295 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515
Tpr4g2536 295 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355|GO:0043565
Tpr4g2536 295 Pfam tify domain 74 104 IPR010399 -
Tpr4g2536 295 MobiDBLite consensus disorder prediction 172 219 - -
Tpr4g2536 295 Gene3D - 196 254 IPR013088 GO:0006355|GO:0008270
Tpr4g2536 295 MobiDBLite consensus disorder prediction 1 32 - -
Tpr4g2536 295 ProSiteProfiles GATA-type zinc finger domain profile. 200 259 IPR000679 GO:0006355|GO:0043565
Tpr4g2536 295 ProSiteProfiles Tify domain profile. 70 105 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2536 Tpr-Chr4 27581911 27587817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2536 56 294 Tify Gene Family AT4G24470 51.373 8.98e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tpr4g2536 CCT 1.4e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2536 - - pvu:PHAVU_008G182900g 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2536 4 27581911 27587817 Tpr4g2536 4 27581911 27587817 ECH
Tpr4g2536 4 27581911 27587817 Tpr3g3373 3 37216743 37222182 PCT