Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2530 ATGACTTTCTCTCTCCAAACAAATACCAAAAGCCAGCGTAGCAATAGCTTAGTAAGTTGTTACCGTCAATTTCCCCTTTTCCCGATCAAAAAATTCACAAATTCCATTAAATTAAAAATGGAGAGAAAACATTCTTCTAACAACAACACCTTCAAAAAGACTTTGCAAATAACACAAGAGGGCAAAAATCAAAACAAGAACAAGTCTTCTTTCACTGAGCAAGACTCTCTTGTTCTCTTACAAAAGTACGATGCAAGCACATTGTTGAAGTTATTGCAAGAAGTGGCGAGTCATGATCGTTGGAAGATTAATTGGAACGAGATGGTGAAAAAAACTTCGACCGGTATTTCGAGTGCGAAAGAGTATCAAATGTTGTGGCGTCATTTGGCCTATGGTCATTCCTTGATTGATGCTGATTTTGAAGATGATGATCTACCTTTGGATGATGATAGTGACTTGGAATGTGAAAAGGAAACATTACCATCCATTCCCAAACAAACTGCTTTGCAAGCTGCAGCATGTGTCCAGGTAATGATATCTTCTGTTCCAATGAGTGAATGTAATCCAACTAGCGCAACAATTGAAGCTCCTTTGACTATAAATGTTCCAACACCATCATCACATGCTTCATGTAGTACAAGTTCACAACCATTTAATAATTTGATACAAAAGCCAAACATTGTTTTTCCAGTTATTGTTGAGAGACAAACAAGGTTAAATAATGTATCTTCAACAACTAAATATGTACAAAATAATGGATTAGTTGGTCACAATGTTACATCAAATATTCAAAGGAAAAGAAAAGGATGGACAAAGGAAGAGGATATGCAATTACAAGCTGCTGTTGAGAAATGGGGTGAAGGGAATTGGGCAGATATTGCTGGAAGAGATGACTTTACTATTGATAAAACTGCTGCACAGTTGTCTAAGAGGTGGAGAATTTTACGAAATAAAGTTGGTGGCAATAATTGA 972 0.3632 MTFSLQTNTKSQRSNSLVSCYRQFPLFPIKKFTNSIKLKMERKHSSNNNTFKKTLQITQEGKNQNKNKSSFTEQDSLVLLQKYDASTLLKLLQEVASHDRWKINWNEMVKKTSTGISSAKEYQMLWRHLAYGHSLIDADFEDDDLPLDDDSDLECEKETLPSIPKQTALQAAACVQVMISSVPMSECNPTSATIEAPLTINVPTPSSHASCSTSSQPFNNLIQKPNIVFPVIVERQTRLNNVSSTTKYVQNNGLVGHNVTSNIQRKRKGWTKEEDMQLQAAVEKWGEGNWADIAGRDDFTIDKTAAQLSKRWRILRNKVGGNN* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2530 323 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 63 320 - -
Tpr4g2530 323 CDD SANT_TRF 270 317 - -
Tpr4g2530 323 Gene3D - 258 318 - -
Tpr4g2530 323 SMART sant 266 318 IPR001005 -
Tpr4g2530 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 262 320 IPR017930 -
Tpr4g2530 323 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 63 320 - -
Tpr4g2530 323 ProSiteProfiles Myb-like domain profile. 262 316 IPR001005 -
Tpr4g2530 323 Pfam Myb-like DNA-binding domain 267 313 IPR001005 -
Tpr4g2530 323 SUPERFAMILY Homeodomain-like 265 316 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2530 Tpr-Chr4 27468629 27472122 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr4g2530 Myb_DNA-binding 3.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2530 - - cam:101491410 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2530 4 27468629 27472122 Tpr3g3381 3 37315899 37322929 PCT