Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2520 ATGGGTGGTGCACCTTCTTTCAACCCATTCAGCAAAATTTTCCCCTTCTTCCCCATCATCATTGTCATATTCACTACCACGCTCATTCTAATCGCAAGTGCCGAAGATCACAATTCAAAAGAAAATGGAACAATTCATAGTCTCAAAGATGACAATGGCATTGCCGCGTCATCACCACCTCCTATATCATCAACAGATAGCTCCGGTCACGTGGCGAAGAAATTAGTTACATTTAAACCTAGCACGGCAGTGATAGTAGGTGTTTTAACAACCACATTTTCCCTTGCATTGCTACTCCTCCTATACGCCAAACATTGCAATAGTGGAAATGTATTTGCTGCTAGCAATGCAAATCTTGACGGGGAATCACGTTTGCATGAGCGGAAGAACTCTGGGATTGATCGTACTATTGTGGAATCATTGCCGGTTTTCAAGTTTGAGTCGTTGACAGGCCAAAAACATGGACTAGAATGTGCGGTTTGTCTAAACGGGTTTGAGGATCCCGAGGTACTCAGGTTATTGCCAAAATGCAAGCATGCTTTCCACATGGAATGTGTTGACACATGGCTTGACGAACATTCCACGTGCCCACTTTGTCGTTATAAGGTGGATCCCAATGACATCAATCTTCCTCTGCAACAAAACACAGAGGAAGCATTGTCATCTTCAGACATTGAAAGTGGAAGAGTTATTAGTAATATTAACGACAATGTGTCACAACAAGAAAATGAAAATGTAGGTTCACTACATGTTTTGGAGAATAGTGAAACGTCCTGTAAGGTTGATTTAGACTCAAATCAAAATTCTAATAGTAATTCCAGAAACGTAAGGAGTGAGGATGTCACTGGAGAGCATAGGTTAGACCACCGTATAATTTTGTCCCCCACCTGTTCTGATACATCACACAGTGGGGTCCACCAACGGTGGAGCAATTTTGAATCAGGTGATATGCTTTACCTAAACTCTGATAGGCTCATTAGTGATAGTTCTTCACAGTTGAATAGCTTGCATGAGGGAAGGAGAATGGTGGTAGAGCGTAATCGCAATATTCTTGATGATGAGATGGAGAATGGTTTTGGTGGTGGTGGGAGGGGTGAGAGGAATTTGAGGACTGTCTCCGAGAGGGTAGGGATGACTAGATTTTTGAGTAGGGAGAGATGGAGGGAAACAGAGCGTGGTAGTAGGGAAGAACAAGCGCGCCAACGTGAGAGAGTGACTTCGAGGTGGTTGGCTTGGATTTCTGGGCCAAAAACACAATGA 1260 0.4333 MGGAPSFNPFSKIFPFFPIIIVIFTTTLILIASAEDHNSKENGTIHSLKDDNGIAASSPPPISSTDSSGHVAKKLVTFKPSTAVIVGVLTTTFSLALLLLLYAKHCNSGNVFAASNANLDGESRLHERKNSGIDRTIVESLPVFKFESLTGQKHGLECAVCLNGFEDPEVLRLLPKCKHAFHMECVDTWLDEHSTCPLCRYKVDPNDINLPLQQNTEEALSSSDIESGRVISNINDNVSQQENENVGSLHVLENSETSCKVDLDSNQNSNSNSRNVRSEDVTGEHRLDHRIILSPTCSDTSHSGVHQRWSNFESGDMLYLNSDRLISDSSSQLNSLHEGRRMVVERNRNILDDEMENGFGGGGRGERNLRTVSERVGMTRFLSRERWRETERGSREEQARQRERVTSRWLAWISGPKTQ* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2520 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 208 IPR013083 -
Tpr4g2520 419 CDD RING-H2_EL5_like 157 200 - -
Tpr4g2520 419 SUPERFAMILY RING/U-box 137 206 - -
Tpr4g2520 419 PANTHER RING-H2 FINGER PROTEIN ATL43 55 416 - -
Tpr4g2520 419 ProSiteProfiles Zinc finger RING-type profile. 158 200 IPR001841 -
Tpr4g2520 419 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 55 416 - -
Tpr4g2520 419 SMART ring_2 158 199 IPR001841 -
Tpr4g2520 419 Pfam Ring finger domain 157 200 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2520 Tpr-Chr4 27383851 27385110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2520 77 412 C3H Transcription Factor Family AT5G05810 38.243 1.95e-55 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2520 K19041 - mtr:MTR_5g066250 476.092