Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2518 ATGGCAAGGCAAAAGATAAAGATAAAGAAAATAGATAATGCAACAGCAAGACAAGTGACATTTTCAAAGAGAAGAAGAGGGATTTTCAAGAAAGCTGAAGAGCTTTCAGTGTTGTGTGATGCTGAAGTTGGTCTTGTGATTTTCTCAACAACTGGAAAACTCTATGAATATGCCAGCTCTAGTATGAAGGACATAATTGCAAGGTATAATCAGCACTCCCAACAATTGAACAAATTGGACGAACCTTTGCAACTGCAGGTAGAGACAAGCGTGTCAGCTGAATTGCATAAGGAAGTTGCTGATAAAACCCAACAACTAAGGGGAATGAAAGGTGAAGATTTTGAAGGGTTAAATTTAGATGGGCTGCAACAATTGGAGAAAAAACTTGAAACAGGACTCAAGCGTGTGATTCAGATGAAGGAAAAGAGGGTTATGAATGAGATTGGCACACTTCAGATGAAGGGTGTCAAGTTAGAAGAGGAGAACAAGCATTTAAAGCAAAAGATGGCTATGTTTTTTAAGGGAAAAAGTCCTATCTTGGGGGACTTGGATAATACCATGCAGGAAAATGTTGTTTCATCAGAGTCCATGAATAATGCATGCAGCTGCAATAGTGGACCTTCTCTTGAACACGATTCTTCTGACACATCTCTTAAGTTAGGGTTGCCGTTTCCCTAA 678 0.3923 MARQKIKIKKIDNATARQVTFSKRRRGIFKKAEELSVLCDAEVGLVIFSTTGKLYEYASSSMKDIIARYNQHSQQLNKLDEPLQLQVETSVSAELHKEVADKTQQLRGMKGEDFEGLNLDGLQQLEKKLETGLKRVIQMKEKRVMNEIGTLQMKGVKLEEENKHLKQKMAMFFKGKSPILGDLDNTMQENVVSSESMNNACSCNSGPSLEHDSSDTSLKLGLPFP* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2518 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr4g2518 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr4g2518 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr4g2518 225 MobiDBLite consensus disorder prediction 206 225 - -
Tpr4g2518 225 Pfam K-box region 93 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr4g2518 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr4g2518 225 Coils Coil 122 142 - -
Tpr4g2518 225 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Tpr4g2518 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr4g2518 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tpr4g2518 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tpr4g2518 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 220 - -
Tpr4g2518 225 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Tpr4g2518 225 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Tpr4g2518 225 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr4g2518 225 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2518 Tpr-Chr4 27307806 27319411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2518 1 224 MADS-box Gene Family AT2G22540 53.138 2.71e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr4g2518 K-box 4.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2518 - - pop:7461823 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2518 4 27307806 27319411 Tpr4g2518 4 27307806 27319411 ECH