Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2517 ATGATGAACGCAACTCGAGCAGAAGCAGAACGGTTACTCGGAATCTCAGAAAAACTTTTACAAAACCGAGATCTAAAGGGTTCAAAAGAATTCGCAATCTTAGCCCAAGAAACCGAACCTCTTCTAGAAGGTTCCGATCAGATCTTAGCAATCGTCGAAGTTCTCATCGCCTCCGAAAAACGCATCAACAACAACCCTGACTGGTACTCCATCCTCCAAATCGATCGCAGATCCGACGACCTCGAACTCATAAAAAAACAGTACCGCCGTCTTGCTCTCCTTCTTCATCCCGACAAAAGCCGATTTCATTTCGCCGATCACGCTTTCAAGCTTGTTGCTGATGCTTGGGCTGTTCTCTCCGATCCAATTAAGAAATCTCATTACGATAAAGATCTATCGTATTTTGCTCGTGTTGATTTATCGGTTCCCGGTTGGGTTCAGCAAGATAAGTTACCGGTTCGAAGAACCGTTCCCGGTACTGGTACTGGGTCTGGTCCACGGAACAGTGCGGCTTCTGCTAGAGATGAGATAGCGGCAGATGTTCGTAGGAACGCGACGTTTTGGACGGCGTGTCCTTACTGTTACCGTTTGTATGAGTACCCTAAGGTTTATGAGGGTTACTGTTTGAAATGTCCTAATTGTGAGAGATCTTTTCATGGTGTAAATGTTCCGTCTTTACCGCCGTTAGTTCCGGGGCAAGAAGCTTATTATTGTTGCTGGGGTTTTTTCCCCATGGGGTTTGTGCATGGTGGTTCTGTTGAGAAAGAGGCTGAGCTGGCACCTGAGGTTGTGCCGGATGAACCTGCTCCGGTGCCAATAGCCGTTCAGCCTGCTTCTTCACTTCCTAATTGGATGCCGGCGCCTGTACCTGTGGAGAATGGTAGGAATAATGTAATGCCAGTGCCACCAGTGTCAGCTACGGTTACTACACCAGCTAGGGTGACAACAAGGTCAGGTGTTGTTACCGGTGGTGTTGCAAATGGTGTTGCTGGTTCGGGATCAGGTCCGAAGAAGCGGGGAAGGCCAAGGAAGTATTATTAA 1041 0.4793 MMNATRAEAERLLGISEKLLQNRDLKGSKEFAILAQETEPLLEGSDQILAIVEVLIASEKRINNNPDWYSILQIDRRSDDLELIKKQYRRLALLLHPDKSRFHFADHAFKLVADAWAVLSDPIKKSHYDKDLSYFARVDLSVPGWVQQDKLPVRRTVPGTGTGSGPRNSAASARDEIAADVRRNATFWTACPYCYRLYEYPKVYEGYCLKCPNCERSFHGVNVPSLPPLVPGQEAYYCCWGFFPMGFVHGGSVEKEAELAPEVVPDEPAPVPIAVQPASSLPNWMPAPVPVENGRNNVMPVPPVSATVTTPARVTTRSGVVTGGVANGVAGSGSGPKKRGRPRKYY* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2517 346 MobiDBLite consensus disorder prediction 316 346 - -
Tpr4g2517 346 Pfam DnaJ domain 67 129 IPR001623 -
Tpr4g2517 346 ProSiteProfiles dnaJ domain profile. 67 132 IPR001623 -
Tpr4g2517 346 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 3 344 - -
Tpr4g2517 346 PRINTS DnaJ domain signature 69 87 IPR001623 -
Tpr4g2517 346 PRINTS DnaJ domain signature 88 103 IPR001623 -
Tpr4g2517 346 PRINTS DnaJ domain signature 104 124 IPR001623 -
Tpr4g2517 346 SMART dnaj_3 66 124 IPR001623 -
Tpr4g2517 346 Gene3D DnaJ domain 55 139 IPR036869 -
Tpr4g2517 346 CDD DnaJ 67 121 IPR001623 -
Tpr4g2517 346 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 3 344 - -
Tpr4g2517 346 SUPERFAMILY Chaperone J-domain 61 133 IPR036869 -
Tpr4g2517 346 ProSitePatterns Nt-dnaJ domain signature. 109 128 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2517 Tpr-Chr4 27280177 27281659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2517 3 343 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 48.433 8.91e-102 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2517 - - gmx:100816918 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2517 4 27280177 27281659 Tpr4g2517 4 27280177 27281659 ECH
Tpr4g2517 4 27280177 27281659 Tpr3g3390 3 37396694 37398126 PCT