Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2513 ATGCTTCCTCCTTTAAGGAGATTCTATGGGTTTGAGAGCTGGCTAGATAAAGATTCAGAAAAAATCAACGGTGAGAAATCAAAATCGGAGAGGAAATCAAGAGAAGCATGCAAGAGTCACAGGGAAGCTGAAAGGAGACGCAGACAGCGAATCAATGCCCATCTCTCCTCTCTTCGCTCTCTCCTCCCCAACACCACCAAGTCAGATAAGGCGTCGTTGCTAGCGGAAGTGGTGCACCACGTGAAACGGTTGAGGAAGGAAGCTGATGACGTAGCGAACCGTAACGATGAGTCGTCGTCTTCGTGTAGTGGAGAACCCGGTTCAGTTGATTCTACGGAAGTAGGTGAGACATGGCCGTTTCCGGGAGAATCGGATGAGGCGACGGTGAGTTATTGCGGCGGAGAGGAAGGGGAACCGAAGCGAATGAAAGTGACAGTTTGTTGTGAAGACCGACCGGGACTGAACCGGGATCTGACTAAAGCAATCCGGTCGGTTCGGGCGATACCGATTCGAGCAGAGATGATGACAGTTGGAGGAAGGACCAAGAGTGTTATGGTGGTGGAGTGGTGTAAAGGAAAGGGTGGTGGTGATGGGAGAGAGGAGAAGGAGGTTGAAGCTTTGGAAAGGGGTTTGAAGGCGGTGATAGAGAATCGGGCTTTTGTTGATTCTAGGATGGGCCCATTTATGTTGGGTCTGAAACGGGCTCGGGAGAGTAATTCTCAGGAATGA 729 0.5062 MLPPLRRFYGFESWLDKDSEKINGEKSKSERKSREACKSHREAERRRRQRINAHLSSLRSLLPNTTKSDKASLLAEVVHHVKRLRKEADDVANRNDESSSSCSGEPGSVDSTEVGETWPFPGESDEATVSYCGGEEGEPKRMKVTVCCEDRPGLNRDLTKAIRSVRAIPIRAEMMTVGGRTKSVMVVEWCKGKGGGDGREEKEVEALERGLKAVIENRAFVDSRMGPFMLGLKRARESNSQE* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2513 242 Gene3D - 27 93 IPR036638 GO:0046983
Tpr4g2513 242 CDD ACT_UUR-ACR-like 144 215 - -
Tpr4g2513 242 PANTHER TRANSCRIPTION FACTOR BHLH30 19 240 IPR045847 GO:0003700|GO:0006355
Tpr4g2513 242 SMART finulus 41 90 IPR011598 GO:0046983
Tpr4g2513 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 35 84 IPR011598 GO:0046983
Tpr4g2513 242 MobiDBLite consensus disorder prediction 88 135 - -
Tpr4g2513 242 SUPERFAMILY ACT-like 140 216 IPR045865 -
Tpr4g2513 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 97 IPR036638 GO:0046983
Tpr4g2513 242 Pfam Helix-loop-helix DNA-binding domain 37 84 IPR011598 GO:0046983
Tpr4g2513 242 PANTHER OS09G0463900 PROTEIN 19 240 - -
Tpr4g2513 242 MobiDBLite consensus disorder prediction 20 50 - -
Tpr4g2513 242 MobiDBLite consensus disorder prediction 95 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2513 Tpr-Chr4 27230725 27231956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2513 32 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 40.704 2.54e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr4g2513 HLH 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2513 - - gmx:100816394 283.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2513 4 27230725 27231956 Tpr4g2513 4 27230725 27231956 ECH