Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g2508 ATGTTCTCAAACTTTCAACAACAACAACAACATAACCTTTTCCAATCCTCTCGTGAATGCCAAACATCAGAAGAAGATGAAACCCGAAGCAGCGGTGGGCCAAGCCCAATAACAGCCCACAAGCCAAGTGGCGGCGACGGTTCCACTGTTGAGATTGGTCGTAGGCCAAGAGGCCGTCCACCTGGCTCCAAAAACAAGCCCAAAACCCAAATCATAGTTAATCGTCAGCCCGAGCCCACGATGAGCCCACACATTCTTGAAATTCCCCAAGGCAGCGATGTTGTTGAAGCAATAGCCCGGTTCAGTAACCGAAGAAAAACCAGTTTATGTGTATTAACCGGTTCAGGTACCGTCTCTAACGTTACACTCCGTCAAATATCTGCTCCTCCCGGCACTACCGTTACTTTTCACGGCCATTTTAACATTCTCTCAATCTCCGCTACGTTCTTCTCCATGTCGGAACCCTCACCGCCGATCCAAAAAGAATTCTCGATCTCTCTCGCCGGACCTCAGGGTCAGATCGTCGGAGGGTTTGTCGTTGGACGGTTGCTTGCCGTTGGTCCGGTGTTTGTGATTGCCGCTTCTTTTAACAATCCATCTTATCATAGGTTACCTTTGGAAGAGGATGTTATGAATAAATCAGTCTCCGGTGGTGGTGGTGGTGATGAGAAGTCCCCACCGCAGCTCACCGGCGGTGGCGAGTCGTGTATGTATAGTGCTCAACTACCTTCGGATGTGATTTGGTCTACAACGCCAAGAACACATTTCTGA 771 0.4929 MFSNFQQQQQHNLFQSSRECQTSEEDETRSSGGPSPITAHKPSGGDGSTVEIGRRPRGRPPGSKNKPKTQIIVNRQPEPTMSPHILEIPQGSDVVEAIARFSNRRKTSLCVLTGSGTVSNVTLRQISAPPGTTVTFHGHFNILSISATFFSMSEPSPPIQKEFSISLAGPQGQIVGGFVVGRLLAVGPVFVIAASFNNPSYHRLPLEEDVMNKSVSGGGGGDEKSPPQLTGGGESCMYSAQLPSDVIWSTTPRTHF* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g2508 256 CDD DUF296 83 196 IPR005175 -
Tpr4g2508 256 MobiDBLite consensus disorder prediction 1 19 - -
Tpr4g2508 256 MobiDBLite consensus disorder prediction 212 235 - -
Tpr4g2508 256 Pfam Plants and Prokaryotes Conserved (PCC) domain 83 198 IPR005175 -
Tpr4g2508 256 PIRSF ESCAROLA 1 249 IPR014476 GO:0003680
Tpr4g2508 256 Gene3D - 82 216 - -
Tpr4g2508 256 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 6 253 - -
Tpr4g2508 256 MobiDBLite consensus disorder prediction 1 85 - -
Tpr4g2508 256 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 208 - -
Tpr4g2508 256 ProSiteProfiles PPC domain profile profile. 78 217 IPR005175 -
Tpr4g2508 256 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 6 253 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g2508 Tpr-Chr4 27134737 27135822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g2508 46 254 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 55.947 7.93e-76 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g2508 - - cam:101500910 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2508 4 27134737 27135822 Tpr4g2508 4 27134737 27135822 ECH
Tpr4g2508 4 27134737 27135822 Tpr3g3004 3 32429186 32430969 PCT